Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   I0P84_RS13895 Genome accession   NZ_AP024524
Coordinates   2901181..2903403 (+) Length   740 a.a.
NCBI ID   WP_214001669.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2896181..2908403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS13875 (RYU24_27540) lnt 2896997..2898556 (+) 1560 WP_104426672.1 apolipoprotein N-acyltransferase -
  I0P84_RS13880 (RYU24_27550) - 2898638..2898973 (-) 336 WP_104426673.1 hypothetical protein -
  I0P84_RS13885 (RYU24_27560) gspG 2899258..2899641 (-) 384 WP_240904185.1 type II secretion system major pseudopilin GspG -
  I0P84_RS13890 (RYU24_27570) gspF 2899826..2901031 (-) 1206 WP_214001668.1 type II secretion system inner membrane protein GspF -
  I0P84_RS13895 (RYU24_27580) priA 2901181..2903403 (+) 2223 WP_214001669.1 primosomal protein N' Machinery gene
  I0P84_RS13900 (RYU24_27590) - 2903478..2905334 (+) 1857 WP_214001670.1 cation:proton antiporter -
  I0P84_RS13905 (RYU24_27600) hslO 2905385..2906260 (+) 876 WP_004781734.1 Hsp33 family molecular chaperone HslO -
  I0P84_RS13910 (RYU24_27610) - 2906504..2906935 (+) 432 WP_228301727.1 DUF2147 domain-containing protein -
  I0P84_RS13915 (RYU24_27620) - 2907213..2907674 (+) 462 WP_004781732.1 DUF2147 domain-containing protein -
  I0P84_RS13920 (RYU24_27630) - 2907866..2908327 (+) 462 WP_004781731.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83815.79 Da        Isoelectric Point: 8.5527

>NTDB_id=85820 I0P84_RS13895 WP_214001669.1 2901181..2903403(+) (priA) [Acinetobacter variabilis strain RYU24]
MPNSVPVTAPVYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVITEKLPLDAPIDPSFKLKAITELL
DDRAIINSQVLSVLTWSAHYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSSQPVQLAQMPLTANPEQKHAIQQVLKYRKQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERIAQLIIQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQVQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWQNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=85820 I0P84_RS13895 WP_214001669.1 2901181..2903403(+) (priA) [Acinetobacter variabilis strain RYU24]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTGTTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGTGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTGATTACTGAAAAATTACCGCTAGATGCTCCGATTGATCCCAGTTTCAAACTGAAAGCCATTACCGAGCTTTTA
GATGACCGTGCCATTATCAATTCCCAGGTTTTAAGTGTATTGACCTGGTCAGCACATTATTACCAGTTTCCTATCGGGGA
AGTGATCCAGACTGCCTTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAAGTTCGCCGTTCCGAGAGGCAACAGGAAGCTTATCGGATTCTAAAACTGCATCCGGTGGGA
ACAACTGAAAATCTACTGAATCTGGCCGGAATAGAAACAGCGACTTTGAAAGCACTCGAAAAAAAAGGGATTTGCGAATG
TGTACTGGAAGCACAGGATTTTAGCTCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATCCGGAACAAAAGC
ATGCGATTCAGCAAGTGCTGAAATACCGCAAGCAATATCAGGCCTTTTTACTCGATGGCCTGACTGGCAGTGGCAAAACT
GAAGTCTATCTTCAGATCATGGAACAGGTACTCAAACAGGGCAAGCAGGTGCTGGTACTGGTGCCTGAAATCGGACTGAC
GCCACAAACCATTAGCCGCTTTCAATCCCGCTTCCATTGTCATATCGCCCTGCTTCACTCTGGCCTGAATGACAGTAAAC
GCTTGCAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCGTCCATTGTACTTGGCACCCGTTCTGCGATTTATACACCGATG
CCGAATCTAGGCCTGATCATTCTGGATGAAGAGCATGACCTGTCTTTTAAACAGCAGGAAGGCTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTACTCTTGGGTTCGGCAACACCCAGCATTGACAGTTATG
CACTGGTGCAGCAAGGCAAAATGCAGGTGCTGGAACTGAATCAACGCGCGGGTACAGCGCTAATGCCGAAAATCCATATT
CTGGATTTAAAAGTAGCGCCAAAGCAGCATGGCATCAGCCTGCATCTGATTGAAGAAATCAAAAAGCGCCTGGCTAAAAA
AGAACAGGTACTCATTTTCCTGAATCGTCGTGGTTATGCGCCCGTACTGATTTGTGGTAGTTGTGGCTGGCAGGCGCAGT
GTCCGAACTGTGATGCCAATTTCACTGTGCACCGGCAACCTTATCAGCATCTGCATTGTCATCATTGTGGCACCATTCAT
CGTATGCCTGAACAGTGTCCGCAATGCCAGCATCAGGAGTTGGCCACTTTAGGCATGGGGACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTTTGAAGTGATCCGGGTCGATCGCGACTCAACCAGCCGGGTCGGTAGTTGGCAAAAGA
TCTATGACAAGATTCAGAAAAGTGAGCCTGCGATTCTGCTCGGCACGCAGATGCTCGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTTGCAATTCTGGATATCGATTCTGGTCTTCTCAGTGTCGATTTCCGGGCCACAGAACGTATAGCACAATT
GATCATACAGGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGGGATGTATATTTACAGACCCTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGTGCCTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGTACAAAATACCGAATTCTTACAGAAACATGC
TGCTCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCTATTCCTGCTCCGATGGAACGCAAGGCCGGAC
GCTATCAATCCCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCAAAACCTG
TTACAAGATAAGCCATCCAATATGAAGCTGACACTGGATATCGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.065

100

0.722

Multiple sequence alignment