Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   Q3O83_RS05680 Genome accession   NZ_CP130445
Coordinates   1096628..1097581 (+) Length   317 a.a.
NCBI ID   WP_044053096.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091628..1102581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS05655 (Q3O83_05655) argF 1093447..1094418 (+) 972 WP_115996244.1 ornithine carbamoyltransferase -
  Q3O83_RS05660 (Q3O83_05660) - 1094494..1094673 (+) 180 WP_003155070.1 YjzC family protein -
  Q3O83_RS05665 (Q3O83_05665) - 1094709..1094894 (-) 186 WP_003155069.1 YjzD family protein -
  Q3O83_RS05670 (Q3O83_05670) - 1095155..1095889 (+) 735 WP_014304780.1 hypothetical protein -
  Q3O83_RS05675 (Q3O83_05675) - 1095972..1096538 (+) 567 WP_161503320.1 hypothetical protein -
  Q3O83_RS05680 (Q3O83_05680) med 1096628..1097581 (+) 954 WP_044053096.1 BMP family ABC transporter substrate-binding protein Regulator
  Q3O83_RS05685 (Q3O83_05685) comZ 1097594..1097785 (+) 192 WP_003155061.1 ComZ family protein Regulator
  Q3O83_RS05690 (Q3O83_05690) - 1097815..1098033 (-) 219 WP_044053097.1 hypothetical protein -
  Q3O83_RS05695 (Q3O83_05695) - 1098201..1099139 (+) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  Q3O83_RS05700 (Q3O83_05700) fabF 1099162..1100400 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  Q3O83_RS05705 (Q3O83_05705) - 1100484..1101269 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  Q3O83_RS05710 (Q3O83_05710) - 1101443..1102429 (+) 987 WP_048367994.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35375.97 Da        Isoelectric Point: 4.5594

>NTDB_id=858193 Q3O83_RS05680 WP_044053096.1 1096628..1097581(+) (med) [Bacillus amyloliquefaciens strain C6.7]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKTIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=858193 Q3O83_RS05680 WP_044053096.1 1096628..1097581(+) (med) [Bacillus amyloliquefaciens strain C6.7]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAACGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCTTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782