Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q3O83_RS00250 Genome accession   NZ_CP130445
Coordinates   45651..45941 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40651..50941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS00210 (Q3O83_00210) darA 40668..40997 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  Q3O83_RS00215 (Q3O83_00215) - 41010..41450 (+) 441 WP_004264730.1 YaaR family protein -
  Q3O83_RS00220 (Q3O83_00220) holB 41462..42451 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  Q3O83_RS00225 (Q3O83_00225) ricT 42454..43281 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  Q3O83_RS00230 (Q3O83_00230) yabA 43296..43655 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  Q3O83_RS00235 (Q3O83_00235) - 43716..44459 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  Q3O83_RS00240 (Q3O83_00240) - 44446..44745 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  Q3O83_RS00245 (Q3O83_00245) rsmI 44720..45601 (+) 882 WP_044052729.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  Q3O83_RS00250 (Q3O83_00250) abrB 45651..45941 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  Q3O83_RS00255 (Q3O83_00255) metG 46424..48415 (+) 1992 WP_004264704.1 methionine--tRNA ligase -
  Q3O83_RS00260 (Q3O83_00260) - 48491..49258 (+) 768 WP_004264700.1 TatD family hydrolase -
  Q3O83_RS00265 (Q3O83_00265) - 49393..50718 (+) 1326 WP_094247906.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=858174 Q3O83_RS00250 WP_169510469.1 45651..45941(-) (abrB) [Bacillus amyloliquefaciens strain C6.7]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=858174 Q3O83_RS00250 WP_169510469.1 45651..45941(-) (abrB) [Bacillus amyloliquefaciens strain C6.7]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979