Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYC30_RS01655 Genome accession   NZ_CP130347
Coordinates   351470..352861 (+) Length   463 a.a.
NCBI ID   WP_302677123.1    Uniprot ID   -
Organism   Thermosynechococcus sp. JY1339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 346470..357861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC30_RS01625 (QYC30_01625) - 347740..348390 (+) 651 WP_302677120.1 hypothetical protein -
  QYC30_RS01630 (QYC30_01630) - 348419..349831 (+) 1413 WP_302677121.1 serine/threonine-protein kinase -
  QYC30_RS01635 (QYC30_01635) - 349797..350294 (-) 498 WP_206200793.1 GNAT family N-acetyltransferase -
  QYC30_RS01640 (QYC30_01640) secG 350306..350539 (-) 234 WP_149821094.1 preprotein translocase subunit SecG -
  QYC30_RS01645 (QYC30_01645) - 350649..350969 (+) 321 WP_149821092.1 phasin family protein -
  QYC30_RS01650 (QYC30_01650) - 350963..351451 (+) 489 WP_302677122.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QYC30_RS01655 (QYC30_01655) radA 351470..352861 (+) 1392 WP_302677123.1 DNA repair protein RadA Machinery gene
  QYC30_RS01660 (QYC30_01660) cobU 352901..353458 (-) 558 WP_302677124.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  QYC30_RS01665 (QYC30_01665) - 353475..354305 (-) 831 WP_302677125.1 ABC transporter permease -
  QYC30_RS01670 (QYC30_01670) argF 354313..355227 (-) 915 WP_302677126.1 ornithine carbamoyltransferase -
  QYC30_RS01675 (QYC30_01675) plsY 355381..356016 (-) 636 WP_302677127.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  QYC30_RS01680 (QYC30_01680) - 356027..356995 (-) 969 WP_206200799.1 DUF3086 domain-containing protein -
  QYC30_RS01685 (QYC30_01685) - 356985..357389 (-) 405 WP_206200800.1 DUF3119 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49620.14 Da        Isoelectric Point: 7.6433

>NTDB_id=858096 QYC30_RS01655 WP_302677123.1 351470..352861(+) (radA) [Thermosynechococcus sp. JY1339]
MPKAKVLYICRECGAESLQYFGRCPNCGQWNTLDEQVVTPVESSTRGTTPRKSTTPHPRSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAASPSLYLLAETNLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVHPQTVIIGEVGL
GGQVRAVSQLELRLREALKLGFRRAIIPESQACTITGLEIYSVRRVTDAIVTALAPLTSDESL

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=858096 QYC30_RS01655 WP_302677123.1 351470..352861(+) (radA) [Thermosynechococcus sp. JY1339]
ATGCCCAAGGCCAAGGTACTGTACATCTGCCGCGAGTGTGGTGCCGAGTCTCTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTCGATGAGCAGGTGGTTACCCCTGTAGAGAGTTCTACTCGAGGTACCACACCCCGAAAATCAA
CCACTCCCCACCCCCGCAGTGCCAAGGCCCTAGGAGAGATTAGCGAACAGACACAGAGCCGTTCTGCCTCCGGATTTGCC
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCCGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTTGCAGATGGCAGCCACCTTAGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCTGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGCTTGGGCATTGCCGCCTCCCCCTCGCTCTATCTTTTGGCGGAGACGAATTTGGAGGTG
ATCCTGCAGGAGCTGACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAATTGAC
GGCTGCCCCGGGATCTGTGTCTCAGGTACGCGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAGATGAGTC
TCTTTATTGTGGGTCATGTTACAAAGGAGGGGGCGATCGCTGGCCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGGGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCGGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTAGTTAGCCCCACCAGT
TATCCCTCTCCACGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTGGCCGTCCTAGAAAAACGCCT
AGGCGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTGG
GGGTGGCAGTGGCTGTTGTGGCTAGTTTTCGCGATCGCTGGGTGCACCCCCAAACCGTGATCATTGGCGAAGTGGGCTTA
GGGGGGCAAGTGCGAGCGGTTTCCCAGTTAGAATTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAGCCAAGCCTGCACCATCACTGGCTTAGAAATTTATTCAGTGCGCCGCGTAACTGATGCTATCGTTACTGCCC
TTGCCCCACTCACCTCTGATGAATCTTTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(72-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.565

99.352

0.492
  radA Streptococcus mitis NCTC 12261

49.428

94.384

0.467
  radA Streptococcus pneumoniae Rx1

49.428

94.384

0.467
  radA Streptococcus pneumoniae D39

49.428

94.384

0.467
  radA Streptococcus pneumoniae R6

49.428

94.384

0.467
  radA Streptococcus pneumoniae TIGR4

49.428

94.384

0.467
  radA Streptococcus mitis SK321

49.428

94.384

0.467