Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYC28_RS11880 Genome accession   NZ_CP130346
Coordinates   2419119..2420510 (-) Length   463 a.a.
NCBI ID   WP_302679541.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HY596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2414119..2425510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC28_RS11850 (QYC28_11850) - 2414612..2415016 (+) 405 WP_302679540.1 DUF3119 family protein -
  QYC28_RS11855 (QYC28_11855) - 2415006..2415974 (+) 969 WP_149821078.1 DUF3086 domain-containing protein -
  QYC28_RS11860 (QYC28_11860) plsY 2415985..2416620 (+) 636 WP_149821080.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  QYC28_RS11865 (QYC28_11865) argF 2416762..2417676 (+) 915 WP_286649676.1 ornithine carbamoyltransferase -
  QYC28_RS11870 (QYC28_11870) - 2417681..2418532 (+) 852 WP_190278093.1 ABC transporter permease -
  QYC28_RS11875 (QYC28_11875) cobU 2418549..2419115 (+) 567 WP_149821086.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  QYC28_RS11880 (QYC28_11880) radA 2419119..2420510 (-) 1392 WP_302679541.1 DNA repair protein RadA Machinery gene
  QYC28_RS11885 (QYC28_11885) - 2420529..2421017 (-) 489 WP_302679542.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QYC28_RS11890 (QYC28_11890) - 2421011..2421331 (-) 321 WP_149821092.1 phasin family protein -
  QYC28_RS11895 (QYC28_11895) secG 2421441..2421674 (+) 234 WP_149821094.1 preprotein translocase subunit SecG -
  QYC28_RS11900 (QYC28_11900) - 2421686..2422183 (+) 498 WP_149821096.1 GNAT family N-acetyltransferase -
  QYC28_RS11905 (QYC28_11905) - 2422149..2423561 (-) 1413 WP_149821099.1 serine/threonine-protein kinase -
  QYC28_RS11910 (QYC28_11910) - 2423590..2424240 (-) 651 WP_149821101.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49511.12 Da        Isoelectric Point: 7.0687

>NTDB_id=858089 QYC28_RS11880 WP_302679541.1 2419119..2420510(-) (radA) [Thermosynechococcus sp. HY596]
MPKAKVLYICRECGAESLQYFGRCPNCGQWNTLDEQVVTPVETAARRTTSRKSTAPHPLSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAAPPSLYLLAETDLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVQPQTVIIGEVGL
GGQVRAVSQLELRLREALKLGFRRAIIPESQACAIAGLEIYPVHRVTDAIVAALAAMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=858089 QYC28_RS11880 WP_302679541.1 2419119..2420510(-) (radA) [Thermosynechococcus sp. HY596]
ATGCCCAAGGCCAAGGTACTGTATATCTGCCGCGAGTGTGGTGCCGAGTCTCTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTACCCCTGTAGAGACCGCTGCTCGACGCACAACCTCCCGAAAATCGA
CCGCTCCCCACCCCCTCAGCGCCAAGGCCTTAGGAGAGATTAGCGAACAGACCCAGAGCCGTTCTGCCTCTGGATTTGCT
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCCGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTTGCAGATGGCAGCCACCTTGGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCAGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGCTTGGGCATTGCTGCCCCCCCTTCCCTTTATCTCTTGGCCGAGACGGATTTAGAGGTC
ATCCTGCAGGAACTTACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAACTGAC
GGCTGCCCCCGGCTCGGTGTCTCAGGTCCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAAATGAGTT
TATTTATTGTGGGGCATGTCACAAAGGAAGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGTGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCCTCCGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTGGTCAGCCCCACCAGT
TATCCCTCTCCGCGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTCGCCGTCCTAGAAAAACGCCT
AGGCGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTCG
GGGTGGCGGTGGCTGTTGTGGCCAGTTTTCGCGATCGCTGGGTACAACCCCAAACCGTGATCATTGGCGAAGTGGGCTTA
GGGGGACAGGTGCGAGCGGTTTCCCAGTTAGAATTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAGCCAAGCCTGTGCGATCGCGGGGCTAGAAATTTATCCTGTACATCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCGCCATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(72-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.032

100

0.492
  radA Streptococcus pneumoniae Rx1

49.083

94.168

0.462
  radA Streptococcus pneumoniae D39

49.083

94.168

0.462
  radA Streptococcus pneumoniae R6

49.083

94.168

0.462
  radA Streptococcus pneumoniae TIGR4

49.083

94.168

0.462
  radA Streptococcus mitis NCTC 12261

49.083

94.168

0.462
  radA Streptococcus mitis SK321

49.083

94.168

0.462