Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QYC28_RS06870 Genome accession   NZ_CP130346
Coordinates   1369158..1370855 (+) Length   565 a.a.
NCBI ID   WP_149819386.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HY596     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364158..1375855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC28_RS06845 (QYC28_06845) - 1364538..1365239 (-) 702 WP_149819375.1 PilN domain-containing protein -
  QYC28_RS06850 (QYC28_06850) pilM 1365251..1366330 (-) 1080 WP_226971900.1 type IV pilus biogenesis protein PilM Machinery gene
  QYC28_RS06855 (QYC28_06855) - 1366594..1367175 (-) 582 WP_302679189.1 L,D-transpeptidase -
  QYC28_RS06860 (QYC28_06860) - 1367205..1367636 (-) 432 WP_149819381.1 hypothetical protein -
  QYC28_RS06865 (QYC28_06865) - 1367806..1369035 (-) 1230 WP_302679190.1 acetate/propionate family kinase -
  QYC28_RS06870 (QYC28_06870) comA 1369158..1370855 (+) 1698 WP_149819386.1 phospholipase D-like domain-containing protein Machinery gene
  QYC28_RS06875 (QYC28_06875) - 1370874..1371386 (-) 513 WP_149819388.1 adenine phosphoribosyltransferase -
  QYC28_RS06880 (QYC28_06880) - 1371436..1372740 (-) 1305 WP_226971901.1 NCS2 family permease -
  QYC28_RS06885 (QYC28_06885) - 1373143..1374861 (+) 1719 WP_302679191.1 hypothetical protein -
  QYC28_RS06890 (QYC28_06890) - 1374880..1375671 (+) 792 WP_302679192.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63097.68 Da        Isoelectric Point: 8.0435

>NTDB_id=858088 QYC28_RS06870 WP_149819386.1 1369158..1370855(+) (comA) [Thermosynechococcus sp. HY596]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVAMENTYTAPWATYSAGQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQPVAVGDAMVTVRFSPTPRSQPWSVSTNGLIGQTLRWARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=858088 QYC28_RS06870 WP_149819386.1 1369158..1370855(+) (comA) [Thermosynechococcus sp. HY596]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCGATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCACAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCTTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGGGTGCGGGTACGAGTGGCGATGGAAAATACCTACACTGCGCCTTGGGCAACATACA
GTGCTGGGCAGGTGAGTGCCATGGATCCAAGAATGCGGGAGCGCTATAACGACTGGAAAGCGCTGGTGGATACCAACGGC
GATGGCCAACTCAGTGCTGCCGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAAGCGAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCCAAAGGCAGTATGCTCATGCACCACAAGTTTATTGTGATTGACAATCGCCAAGTGATTGCGA
CTACGGCGAACTTTACCCTCAGTGATGTCCACGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGTCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATCATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACCAGTAGCGGTGGGCGATGCCATGGTTACAGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCTTGGTCTGTCTCCACCAATGGCTTGATTGGCCAAACACTACGTTGGGCACGCCAA
AAAATTGACATGGCGCTTTTTGTCTTTTCAGATCAAGAACTATCCTACGTTTTAGAGGAACGCCATAACCAAGGGGTTAG
CATTCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTGGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAGGGCGATAAGCTGCACCACAAGTATGGCGTGGTCGACGATCGCACCGTCATTGTTGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGCGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACACCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCAAAACTAGCGGCTGAAATTATCCGTGCCC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCCGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(81-259)

PLD-like domain (PLDc_2)

(313-460)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.117

100

0.492