Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   I0P84_RS06325 Genome accession   NZ_AP024524
Coordinates   1309268..1309894 (+) Length   208 a.a.
NCBI ID   WP_004783995.1    Uniprot ID   N8WPE0
Organism   Acinetobacter variabilis strain RYU24     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304268..1314894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS06290 (RYU24_12400) kdsB 1304568..1305329 (+) 762 WP_214002118.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I0P84_RS06295 (RYU24_12410) - 1305344..1306324 (+) 981 WP_214002119.1 DNA polymerase III subunit delta' -
  I0P84_RS06300 (RYU24_12420) - 1306342..1306683 (+) 342 WP_005236142.1 PilZ domain-containing protein -
  I0P84_RS06305 (RYU24_12430) - 1306711..1307484 (+) 774 WP_005236141.1 TatD family hydrolase -
  I0P84_RS06310 (RYU24_12440) - 1307525..1308130 (+) 606 WP_214002120.1 TetR/AcrR family transcriptional regulator -
  I0P84_RS06315 (RYU24_12450) - 1308149..1308697 (+) 549 WP_214002121.1 pilus assembly FimT family protein -
  I0P84_RS06320 gspI 1308687..1309271 (+) 585 WP_171065451.1 type II secretion system minor pseudopilin GspI -
  I0P84_RS06325 (RYU24_12470) xcpW 1309268..1309894 (+) 627 WP_004783995.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I0P84_RS06330 (RYU24_12480) gspK 1309909..1310880 (+) 972 WP_214002122.1 type II secretion system minor pseudopilin GspK -
  I0P84_RS06335 (RYU24_12490) - 1311039..1311635 (+) 597 WP_034170570.1 6-pyruvoyl trahydropterin synthase family protein -
  I0P84_RS06340 (RYU24_12500) ung 1311681..1312394 (+) 714 WP_005236130.1 uracil-DNA glycosylase -
  I0P84_RS06345 (RYU24_12510) - 1312391..1313512 (+) 1122 WP_214002123.1 enoyl-CoA hydratase/isomerase family protein -
  I0P84_RS06350 (RYU24_12520) tadA 1313519..1314034 (+) 516 WP_214002124.1 tRNA adenosine(34) deaminase TadA -
  I0P84_RS06355 (RYU24_12530) - 1314097..1314531 (+) 435 WP_004783989.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23940.22 Da        Isoelectric Point: 4.7542

>NTDB_id=85807 I0P84_RS06325 WP_004783995.1 1309268..1309894(+) (xcpW) [Acinetobacter variabilis strain RYU24]
MKSKGFTLVELLVAIAIFAVLSALGWKVFDYIIQTKDRNAVHEQRLSQLQDTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERVEYQYRADEQKLYRLKYRNLNQTGRDQPESSVLLSDVEQFQIVVLNPNEMTQWPD
SSFDLNQVEQKQRLPKGIKINLMVNGVSYEWIFSLLNTDFLLETQKLT

Nucleotide


Download         Length: 627 bp        

>NTDB_id=85807 I0P84_RS06325 WP_004783995.1 1309268..1309894(+) (xcpW) [Acinetobacter variabilis strain RYU24]
ATGAAGTCAAAGGGATTTACGCTGGTCGAACTACTGGTTGCTATTGCTATTTTCGCCGTACTGTCTGCTCTAGGCTGGAA
AGTATTTGATTATATTATACAAACCAAAGACCGTAATGCGGTGCATGAACAGCGCTTAAGTCAGTTGCAAGATACTTATC
AGCAGATCTTGCGTGATACGGTACAGGCGGTGCCTTTAACGGCCAATATTAATGGTGATATTCAGCCGGCACTGGTTTTG
CAAAACGGGCGTTTTAACTTTAGTAAGACTGGAGTTACCGATCCTCTGGAAGAGGGAATTTCTCCAGATGAACGGGTTGA
ATATCAGTACCGGGCAGATGAACAAAAACTATATCGCTTGAAATACCGGAATTTAAACCAGACCGGTCGTGATCAACCTG
AATCCAGTGTGTTGTTGTCCGATGTTGAGCAGTTTCAGATCGTAGTGCTTAATCCGAATGAAATGACCCAATGGCCAGAC
TCATCATTTGATTTAAATCAGGTTGAGCAAAAACAGCGCTTGCCCAAAGGCATTAAAATCAACTTAATGGTTAATGGGGT
CAGTTATGAGTGGATTTTCAGTTTATTGAATACAGATTTCCTGCTTGAAACCCAAAAGTTAACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8WPE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

60.199

96.635

0.582

Multiple sequence alignment