Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QTN38_RS06410 Genome accession   NZ_CP130342
Coordinates   1247164..1247790 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae subsp. cloacae strain Ecc8276_LB-HALD     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242164..1252790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN38_RS06390 (QTN38_006390) - 1242564..1244324 (-) 1761 WP_013097259.1 Lon protease family protein -
  QTN38_RS06395 (QTN38_006395) matP 1244511..1244963 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  QTN38_RS06400 (QTN38_006400) ompA 1245027..1246082 (-) 1056 WP_014883252.1 porin OmpA -
  QTN38_RS06405 (QTN38_006405) sulA 1246437..1246946 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  QTN38_RS06410 (QTN38_006410) sxy/tfoX 1247164..1247790 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  QTN38_RS06415 (QTN38_006415) yccS 1247747..1249909 (-) 2163 WP_262789455.1 YccS family putative transporter -
  QTN38_RS06420 (QTN38_006420) - 1249929..1250375 (-) 447 WP_013097253.1 YccF domain-containing protein -
  QTN38_RS06425 (QTN38_006425) helD 1250498..1252552 (+) 2055 WP_262789454.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=858051 QTN38_RS06410 WP_013097255.1 1247164..1247790(+) (sxy/tfoX) [Enterobacter cloacae subsp. cloacae strain Ecc8276_LB-HALD]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=858051 QTN38_RS06410 WP_013097255.1 1247164..1247790(+) (sxy/tfoX) [Enterobacter cloacae subsp. cloacae strain Ecc8276_LB-HALD]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATCCAGCGCTACCAGCGAAACCGGCTAAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567