Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   I0P84_RS04015 Genome accession   NZ_AP024524
Coordinates   828677..833194 (+) Length   1505 a.a.
NCBI ID   WP_214001979.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 823677..838194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS03990 (RYU24_07830) - 824143..824787 (-) 645 WP_034170199.1 hypothetical protein -
  I0P84_RS03995 (RYU24_07840) pilG 825070..825453 (+) 384 WP_004784987.1 twitching motility response regulator PilG Regulator
  I0P84_RS04000 (RYU24_07850) - 825482..825850 (+) 369 WP_004784985.1 response regulator -
  I0P84_RS04005 (RYU24_07860) - 825856..826392 (+) 537 WP_004784984.1 chemotaxis protein CheW -
  I0P84_RS04010 (RYU24_07870) - 826439..828508 (+) 2070 WP_214001978.1 methyl-accepting chemotaxis protein -
  I0P84_RS04015 (RYU24_07880) chpA 828677..833194 (+) 4518 WP_214001979.1 Hpt domain-containing protein Regulator
  I0P84_RS04020 (RYU24_07890) - 833195..833653 (+) 459 WP_214001980.1 hypothetical protein -
  I0P84_RS04025 (RYU24_07900) dapE 833712..834848 (-) 1137 WP_214001981.1 succinyl-diaminopimelate desuccinylase -
  I0P84_RS04030 (RYU24_07910) - 834972..835121 (-) 150 WP_004784975.1 entericidin A/B family lipoprotein -
  I0P84_RS04035 (RYU24_07920) - 835237..836112 (-) 876 WP_214001982.1 DUF1853 family protein -
  I0P84_RS04040 (RYU24_07930) - 836201..836638 (+) 438 WP_125278257.1 YbaN family protein -
  I0P84_RS04045 (RYU24_07940) elsL 836635..837147 (+) 513 WP_214001983.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence

Protein


Download         Length: 1505 a.a.        Molecular weight: 168758.55 Da        Isoelectric Point: 4.2636

>NTDB_id=85804 I0P84_RS04015 WP_214001979.1 828677..833194(+) (chpA) [Acinetobacter variabilis strain RYU24]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSDPAHQENLKTIRRHFHTLKGSGRMVGAKSA
GEIAWAVEDTLNRVLSGSIQLTPTIQQYAKAVLNIYQFTLYPKFKQVHELDVDLRPVVLLGQQLQQQMTPEPALEELLQL
ADSLTAEGQITGLELGDLAEDQDIIAAIETSTTEFELEEADSEDAARSDVEETVAIFIEEAEEHLETIAKFLRSENEKVQ
DYNALIRAIHTLRGSSSMAQIEEIFEASSKVEHLFKTLLQDEIASTSKETAVLIQYAEFVSDYLHLLRQGDSSKLAAVYA
TFERVWNDYGFAATEMETVEPQGLVTKLVELEIDLLLDAEFEFDKRAKVDYPEYIQALSEQAAELLAHTDNRAALGIHEF
TTDLKSAYDALLEKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDDTQKTLSELAAFVQQDLEIFAEDNVPAEQ
VSEEISIPEAATTASIDFAALSQRIASDRQYIDSAETQRDFDEDLLNIFLEEADELLVGIDEDLNTWSKKQDDTTSLNNL
MRHLHTLKGGANMITASHIGSISHELESIYERIIRQQIAVTPALIQIIRLVQDNVSDRIQSIRDEGIDYPAVEAISILQN
IQALVAGQAVVASVETSIPVVEFEYAEATADSEQTADEASEEIASEDTSSDLELALNLEDKQVELIETETLTEPVEVVAE
ERSEEDELKSIVEETFLEESEEILNNTEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIENEQVASIAYELETTFEQF
AVYHFNSNAYDGLLQKTLAWLRQAIFQRDYSNFEQIQSSLKKIAYVDVTAQLPERLAKTETLVTENSFEFVEGDGTEPPR
MMGEWVDTGNTDTSHEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIA
KHGSDNSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLSDKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRM
LPRLQRIVRQTSTTLNRPAELIVQNSEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSILLNISRQGT
DVIVSFSDDGKGIDAEKIREKALSQGLIKEDQTLDSEELLQFIFHPGFSTAKSVTQISGRGVGLDVVQSEIKSLGGHVSV
SSEVGKGTTFTIRVPTTVAVSDALMVKVGDQQYAVSLAQIDRIVRIAPSTLETYFNSKDDFFKIDGVNYKLRYLSEFVSN
QPIPRLNNVAHSLPVLLIKGNSGQTIALLVDQLVGSRAQIVVKPIGHQFANIGVVTGATILGDGQVCLILDGQNIARQIH
GTQRVKHMQDQRDGSRSGNARRLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDG
FEVTNLVRHHDIHRDLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQGS

Nucleotide


Download         Length: 4518 bp        

>NTDB_id=85804 I0P84_RS04015 WP_214001979.1 828677..833194(+) (chpA) [Acinetobacter variabilis strain RYU24]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGACAGTTATCTTGATCAAGATGCAGAAATTCT
TGAAATTTTTGTCGAGGAAATCGAAGAGATTTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGTGATCCGGCTC
ATCAGGAAAACCTGAAAACCATTCGCCGCCATTTTCATACCCTGAAAGGTTCAGGCCGTATGGTGGGGGCTAAATCTGCG
GGTGAAATTGCTTGGGCAGTGGAAGATACCTTAAACCGGGTACTTTCAGGTTCAATCCAGTTAACGCCTACGATTCAACA
GTATGCCAAAGCTGTACTGAATATTTACCAGTTTACTTTATATCCAAAATTCAAACAGGTGCATGAACTCGATGTTGACC
TGCGTCCAGTCGTGCTTTTAGGTCAGCAATTACAACAACAAATGACACCTGAACCGGCTTTAGAAGAACTCTTGCAACTG
GCAGACAGTCTGACTGCCGAAGGCCAGATCACAGGTCTTGAGCTAGGTGATTTGGCTGAAGATCAAGATATAATTGCAGC
AATAGAAACAAGCACAACAGAATTTGAGCTTGAAGAAGCTGATAGTGAAGATGCTGCACGTAGTGATGTAGAAGAAACTG
TAGCGATCTTTATCGAGGAAGCCGAAGAGCATCTCGAAACAATTGCCAAGTTCTTGCGTAGCGAAAATGAAAAAGTGCAG
GATTATAATGCATTGATTCGTGCTATTCATACTTTGCGCGGCAGTTCGTCCATGGCACAGATCGAAGAAATCTTCGAGGC
CAGCTCTAAAGTAGAACATCTGTTTAAAACACTGCTTCAGGATGAAATTGCCTCCACTTCAAAAGAAACTGCTGTATTAA
TTCAGTATGCTGAATTTGTCAGCGACTATCTGCATTTATTACGTCAGGGCGATAGCAGCAAACTGGCAGCAGTGTATGCG
ACTTTTGAGCGTGTCTGGAATGATTATGGCTTCGCAGCCACTGAAATGGAAACAGTTGAACCCCAAGGTCTGGTGACCAA
GCTGGTTGAACTGGAGATTGACCTGTTGCTGGATGCCGAATTTGAATTCGATAAACGCGCGAAAGTCGATTATCCGGAAT
ATATTCAGGCTTTAAGCGAGCAGGCTGCCGAGCTGCTTGCACATACAGATAACCGTGCCGCACTGGGTATTCATGAGTTT
ACGACAGATTTAAAATCTGCCTATGATGCTTTGCTGGAAAAACCGGTACTGCTGAATAGTGATTATGCTTATGAGTTGTT
TGCCCAGGCACATCAGGAATTCATTCATTTATTCGATACCCTGGCAGCAGGCCAGCGTGTCATTTTAAATGATGATACAC
AAAAAACCTTGAGCGAACTGGCCGCATTCGTACAGCAGGATCTGGAAATCTTTGCCGAAGACAATGTCCCTGCTGAGCAA
GTATCAGAAGAAATTTCTATTCCTGAAGCTGCAACCACAGCCAGCATTGACTTTGCTGCTTTAAGCCAGCGTATTGCCTC
TGACCGCCAGTACATCGACAGCGCAGAAACTCAGCGTGATTTCGATGAGGATCTACTGAATATCTTCCTGGAAGAAGCGG
ATGAATTACTGGTAGGTATTGATGAAGATCTGAATACCTGGAGTAAAAAGCAGGATGATACGACTTCACTTAACAATCTG
ATGCGTCATTTGCACACCTTGAAGGGCGGTGCAAACATGATTACCGCTTCTCATATCGGTTCGATTTCGCACGAACTGGA
AAGTATTTATGAGCGAATCATCCGTCAGCAGATTGCAGTAACGCCTGCTCTGATTCAAATCATTCGTCTGGTGCAAGATA
ACGTTTCTGACCGTATCCAGTCGATCCGTGATGAAGGTATCGATTATCCAGCGGTTGAAGCAATTTCGATTCTGCAAAAT
ATTCAGGCATTGGTCGCTGGTCAAGCTGTTGTAGCTTCAGTAGAAACATCGATTCCTGTTGTCGAATTTGAATATGCAGA
AGCTACTGCTGATTCCGAACAAACAGCGGATGAAGCATCGGAAGAGATTGCATCAGAAGACACAAGTTCAGATCTGGAAC
TGGCTCTAAACTTAGAAGATAAACAAGTTGAGCTTATTGAAACAGAAACTTTGACTGAGCCCGTTGAGGTTGTAGCAGAA
GAACGTTCTGAAGAAGATGAACTGAAGTCGATTGTTGAAGAAACCTTCCTGGAAGAATCAGAAGAGATTCTCAACAATAC
CGAAAAACTGCTGAACCAATGGTTTGATCAACGTAGTGACCGTAGCTTATTGCTTCAATTACAACGTGCTGCCCACAGTA
TCAAGGGTGGTGCGCGCATGATTGAAAACGAACAGGTGGCCAGCATTGCGTATGAACTGGAAACCACATTCGAACAGTTT
GCGGTATATCACTTTAACTCGAATGCTTATGATGGCTTGCTGCAAAAAACACTGGCCTGGTTAAGACAAGCTATCTTCCA
GCGTGACTATAGCAATTTTGAACAGATCCAAAGCAGTCTGAAAAAGATTGCTTATGTGGATGTTACTGCGCAGCTGCCGG
AACGTCTGGCTAAAACAGAAACGCTGGTCACTGAAAATAGCTTCGAGTTTGTCGAAGGTGATGGTACTGAGCCACCACGT
ATGATGGGTGAGTGGGTCGATACCGGTAATACCGATACCAGCCACGAGATGATCCGTATCTCTGCTGACCTGGTTGAGAA
GATGATTGACCTGTCAGGTGAGAATGCGATTAACCGTTCGCGTATCGAGATGGACTTAGGCCAACTTGGCAATACCCTGA
ACGAGATGGAACTGGCAATCAAGCGTCTGGCGGATCAGTTGCGCCGAATGGAAGGTGAGCTGGAATCACAGATTATTGCC
AAACACGGTTCAGACAACTCGCGCTATGCAGACTTTGACCCGCTGGAAATGGACCAATATTCGTCACTGAACCAGTTGTC
CAAGTCGCTTGCGGAATCTGCTTCGGACTTGGTTGACTTCAAGAGCACTCTATCTGACAAGATTCGTGAAACTGAAGGTT
TGTTATTACAACAATCACGGATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGGTACCGTTTGATCGGATG
TTGCCACGTTTACAACGTATCGTACGTCAGACGTCTACGACCTTGAATCGTCCGGCCGAACTGATTGTTCAGAATAGTGA
AGGTGAATTAGACCGTAATATTCTGGAGCGTCTGGTAACGCCATTCGAACATATGCTGCGTAATGCGATTGACCATGGTC
TGGAAGATACAGCAGACCGTATTGCCTTGAACAAACCAGAAGTCGGTTCAATCCTGTTGAATATCAGCCGTCAAGGTACA
GATGTTATCGTCTCATTTAGTGATGATGGTAAAGGTATCGATGCTGAGAAGATTCGTGAGAAAGCACTGAGCCAAGGCCT
GATCAAAGAAGATCAGACCCTGGATTCGGAAGAGTTATTGCAATTCATTTTCCACCCGGGCTTCAGTACCGCTAAATCTG
TAACCCAGATTTCAGGTCGTGGTGTCGGACTGGATGTAGTACAAAGCGAGATCAAGTCGCTGGGCGGTCACGTATCTGTC
AGTTCTGAAGTAGGCAAAGGTACAACCTTCACCATTCGCGTACCGACGACTGTAGCAGTTAGCGATGCCTTGATGGTAAA
AGTGGGCGATCAACAATATGCCGTTTCTCTGGCACAAATCGACCGTATTGTACGTATTGCACCATCTACTCTGGAAACTT
ATTTCAACAGTAAAGATGATTTCTTCAAGATTGATGGCGTTAATTACAAATTGCGTTACCTGTCTGAGTTCGTATCGAAT
CAGCCAATTCCACGTCTGAATAATGTGGCGCATTCACTGCCAGTATTACTGATTAAAGGCAACAGTGGTCAAACCATTGC
CTTGTTAGTCGATCAACTTGTCGGTTCACGTGCACAGATCGTGGTGAAACCAATTGGCCACCAGTTCGCCAATATTGGTG
TAGTGACCGGTGCGACGATTCTTGGTGATGGTCAGGTCTGTCTGATTCTAGATGGTCAGAATATTGCCCGTCAGATCCAT
GGTACGCAGCGTGTCAAACACATGCAGGATCAACGTGATGGTTCACGTTCTGGCAATGCTCGCCGTCTGGTAATGATCGT
GGATGACTCGGTGACTGTTCGTAAGGTGACCTCGCGTCTGCTTGAGCGTCAGGGCTATGATATTGTCACCGCCAAAGATG
GTGTGGATGCGATTGAGCAGCTTGAAAATGTCCGTCCGGATCTGATGTTGCTGGATATTGAAATGCCACGTATGGATGGT
TTCGAGGTCACGAACCTGGTCCGTCACCACGATATTCACCGCGACTTGCCAATTATCATGATTACTTCACGTACGGGTGA
AAAACACCGTGAACGTGCTTTCAGTCTGGGCGTAACCCACTACATGGGTAAACCGTTCCAGGAAGCTGAATTACTGGCGA
ATATTCAACAGTTAATTGCTGAAAAACAGGGGTCATAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(1223-1358)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(1081-1216)

Response regulator receiver domain (Response_reg)

(1384-1495)

Hpt domain (Hpt)

(213-287)

Hpt domain (Hpt)

(25-110)

Hpt domain (Hpt)

(524-611)

Hpt domain (Hpt)

(734-798)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.682

100

0.615

Multiple sequence alignment