Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QWJ31_RS20370 Genome accession   NZ_CP130340
Coordinates   2435781..2438294 (-) Length   837 a.a.
NCBI ID   WP_053821512.1    Uniprot ID   -
Organism   Cupriavidus gilardii strain M5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2430781..2443294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWJ31_RS20355 (QWJ31_20355) - 2431941..2432450 (-) 510 WP_053821514.1 gluconokinase -
  QWJ31_RS20360 (QWJ31_20360) edd 2432663..2434525 (-) 1863 WP_151023238.1 phosphogluconate dehydratase -
  QWJ31_RS20365 (QWJ31_20365) - 2434820..2435767 (+) 948 WP_053821513.1 MurR/RpiR family transcriptional regulator -
  QWJ31_RS20370 (QWJ31_20370) comA 2435781..2438294 (-) 2514 WP_053821512.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QWJ31_RS20375 (QWJ31_20375) - 2438475..2439317 (-) 843 WP_053821511.1 TatD family hydrolase -
  QWJ31_RS20380 (QWJ31_20380) lolD 2439345..2440103 (-) 759 WP_053821510.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  QWJ31_RS20385 (QWJ31_20385) - 2440096..2441346 (-) 1251 WP_053821509.1 lipoprotein-releasing ABC transporter permease subunit -
  QWJ31_RS20390 (QWJ31_20390) - 2441475..2442626 (+) 1152 WP_053823045.1 hypothetical protein -

Sequence

Protein


Download         Length: 837 a.a.        Molecular weight: 88950.75 Da        Isoelectric Point: 11.6881

>NTDB_id=858036 QWJ31_RS20370 WP_053821512.1 2435781..2438294(-) (comA) [Cupriavidus gilardii strain M5]
MRLTLCAFVAGCWLVQQLPALPPASIAVTAGLAALVVVLALPPLAGRPGPSSIGFHVRLLATVLAALIVGAAWSVWRAER
RLAERLAAQFEGVTLSLTGVVSGLPTGNGEGLRFAFTVDGDRPAGLPPLLSLGWQQAPPDLLPGTRLAVTARLKRPHGLA
NPHGFDYEYWLLQRGIGATGYVLAARAAAPVALRPAWRIARWRAQIRSRMLAAMPAEAPLAGVLVALAIGDQSGIAAEQW
RWFTRTGIGHLVSISGLHITMISGLAGALARALWRRSFGVGRWLRRPLPLRCPAQRAAALVAVAMALGYGLLSGMEVPAQ
RTVAMVSVAALALWWQRRPPASLVLAWAAAVALALDPWAVRAAGFWLSFGAVAAIFVAASQRTVAVTGGEPSQRSVWQAR
WQGVRRHLAESVRTQWAVTIGLLPPTLLLFQQVSVVSPLANALAIPLVSLLVTPLALCAALLAAWPVDWPAGGAIAMAAA
SLLALAHQAMAWLAAALVRLAAPDWAVWQAARPDTVELAFALLGTAVLLAPRAFGWGWRVHGLVLLIPMLSSGRAPLPAA
AFRATALDVGQGAAVLIETRGHRLLYDAGPAYGPADAPRPSAGERVVVPFLRAVGIHSLDALVISHEDADHAGGARDVMA
ALPVRRLWGSLPRGHPLWRLPPGGGPDVGQVCAAGIAWQWDGVRFELLHPLPGQGDDAAIGSNARSCVLRVSSPYAAMLL
TGDIDRAAELAMVARLPPDALRADLLLVPHHGSRTSSSDEWLDAVRPAAAVFQLGYRNRYRHPHAQVWARYGRRGIARYR
SDRTGAVEVVADRDGIAIASFRQQARRYWRPAPDAPE

Nucleotide


Download         Length: 2514 bp        

>NTDB_id=858036 QWJ31_RS20370 WP_053821512.1 2435781..2438294(-) (comA) [Cupriavidus gilardii strain M5]
ATGCGCCTGACGCTGTGCGCCTTCGTCGCGGGCTGCTGGCTGGTGCAGCAATTGCCGGCATTGCCGCCCGCGTCGATCGC
CGTGACCGCCGGTCTGGCCGCATTGGTCGTGGTGCTCGCGCTGCCGCCGCTTGCCGGGCGTCCGGGGCCCTCCTCGATCG
GCTTCCATGTGCGCTTGCTGGCCACCGTGCTGGCCGCGCTGATCGTCGGCGCGGCATGGTCCGTCTGGCGTGCCGAGCGT
CGCCTGGCCGAGCGGCTTGCGGCGCAGTTCGAAGGCGTCACGCTGTCGCTGACGGGCGTGGTGTCGGGACTGCCGACCGG
CAACGGCGAGGGCCTGCGTTTCGCGTTCACGGTCGACGGCGACAGGCCGGCCGGCTTGCCGCCGCTGCTGTCGCTCGGCT
GGCAGCAGGCGCCGCCCGATCTGCTGCCCGGCACGCGGCTGGCGGTGACCGCACGGCTGAAGCGCCCCCATGGTCTCGCC
AATCCGCATGGCTTCGACTACGAATACTGGCTGCTGCAGCGGGGCATTGGCGCAACCGGCTACGTGCTGGCGGCCCGCGC
CGCGGCGCCGGTGGCCCTGCGGCCGGCCTGGCGCATTGCCCGCTGGCGTGCGCAGATCCGGTCGCGCATGCTGGCGGCGA
TGCCGGCCGAGGCGCCGTTGGCGGGCGTGCTGGTGGCGCTGGCGATCGGCGACCAGAGCGGCATCGCCGCCGAGCAGTGG
CGCTGGTTCACGCGCACCGGCATCGGCCATCTGGTCAGCATCTCGGGCCTGCATATCACGATGATCTCGGGGCTGGCGGG
CGCGCTGGCACGGGCCCTGTGGCGGCGCTCGTTTGGCGTGGGCAGATGGCTGCGGCGGCCGCTGCCGTTGCGCTGTCCGG
CGCAGCGGGCGGCGGCGCTGGTCGCCGTGGCGATGGCGCTCGGCTATGGGCTGCTGTCGGGTATGGAGGTGCCGGCGCAA
CGCACGGTGGCGATGGTGTCCGTGGCCGCGCTGGCGCTGTGGTGGCAGCGCCGGCCGCCGGCCTCGCTGGTGCTGGCCTG
GGCCGCCGCGGTCGCGCTGGCGCTCGACCCGTGGGCGGTGCGGGCGGCGGGCTTCTGGCTGTCGTTCGGCGCGGTCGCCG
CGATCTTCGTGGCGGCGTCGCAGCGAACCGTGGCCGTGACCGGCGGCGAGCCGTCGCAGCGTTCGGTCTGGCAGGCGCGC
TGGCAGGGCGTGCGGCGGCACCTGGCCGAGTCGGTGCGCACGCAATGGGCCGTCACGATCGGACTGCTGCCGCCGACGCT
GCTGTTGTTCCAGCAGGTGTCGGTGGTGTCGCCGCTGGCCAATGCGCTGGCGATTCCGCTCGTCAGCCTGCTGGTGACGC
CGCTGGCGTTGTGCGCGGCGCTGCTGGCCGCCTGGCCCGTGGACTGGCCGGCAGGCGGCGCCATCGCGATGGCCGCCGCA
TCGCTGCTGGCGCTGGCGCACCAGGCGATGGCATGGCTGGCGGCGGCGCTGGTGCGGCTGGCGGCGCCGGACTGGGCCGT
CTGGCAGGCGGCGCGGCCGGACACGGTCGAGCTCGCCTTCGCGCTGCTCGGCACGGCGGTGCTGCTGGCCCCGCGCGCCT
TCGGCTGGGGCTGGCGCGTGCACGGCCTGGTGCTGCTGATCCCGATGCTGTCGAGCGGCCGCGCGCCGCTGCCGGCCGCG
GCCTTCCGCGCGACGGCGCTCGATGTCGGACAGGGCGCGGCGGTGCTGATCGAGACCCGCGGCCATCGGCTGCTGTACGA
CGCCGGGCCAGCCTATGGCCCGGCCGACGCGCCACGGCCCAGCGCCGGCGAACGCGTGGTGGTGCCGTTCCTGCGCGCGG
TCGGCATCCATTCGCTCGATGCGCTGGTGATCAGCCACGAGGATGCCGATCATGCCGGCGGTGCGCGCGACGTGATGGCC
GCGCTGCCGGTCCGGCGCCTGTGGGGCTCGCTGCCGCGTGGCCATCCGCTATGGCGGTTGCCGCCCGGGGGCGGACCCGA
TGTCGGTCAGGTGTGCGCGGCCGGTATCGCGTGGCAATGGGACGGCGTGCGTTTCGAACTGCTGCATCCGTTGCCGGGGC
AGGGCGACGACGCGGCGATCGGCAGCAATGCGCGCAGCTGCGTGCTGCGGGTCTCGAGTCCTTACGCCGCGATGCTGCTG
ACCGGCGATATCGACCGCGCCGCCGAACTGGCGATGGTGGCGCGCCTGCCGCCCGATGCGCTGCGCGCCGACCTGCTGCT
GGTGCCGCACCATGGCAGCCGCACCTCGTCCAGCGACGAATGGCTCGACGCGGTAAGGCCCGCCGCGGCGGTGTTCCAGC
TCGGCTATCGCAACCGCTACCGGCATCCGCATGCGCAGGTATGGGCGCGCTATGGCCGCCGCGGGATCGCGCGCTATCGC
AGCGATCGCACCGGCGCGGTCGAAGTCGTCGCGGATCGGGACGGCATCGCGATCGCGTCGTTCCGGCAGCAGGCGCGGCG
CTACTGGCGGCCGGCGCCGGATGCGCCGGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(568-771)

Competence protein (Competence)

(227-530)

Domain of unknown function (DUF4131) (DUF4131)

(20-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

48.272

100

0.501