Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE97_RS12750 Genome accession   NZ_AP027432
Coordinates   2057446..2057961 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC581 isolate EC581     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2052446..2062961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE97_RS12725 (MUTS9_24610) ygaH 2052860..2053195 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  QUE97_RS12730 (MUTS9_24620) emrR 2053286..2053816 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE97_RS12735 (MUTS9_24630) emrA 2053943..2055115 (+) 1173 WP_021554174.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE97_RS12740 (MUTS9_24640) emrB 2055132..2056670 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE97_RS12745 tnpA 2056785..2057243 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  QUE97_RS12750 (MUTS9_24660) luxS 2057446..2057961 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE97_RS12755 (MUTS9_24670) gshA 2058111..2059667 (-) 1557 WP_063086205.1 glutamate--cysteine ligase -
  QUE97_RS12760 (MUTS9_24680) yqaA 2059740..2060168 (-) 429 WP_001287454.1 YqaA family protein -
  QUE97_RS12765 (MUTS9_24690) yqaB 2060165..2060731 (-) 567 WP_063086203.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE97_RS12795 (MUTS9_24700) csrA 2062055..2062240 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=85802 QUE97_RS12750 WP_001130211.1 2057446..2057961(-) (luxS) [Escherichia coli strain EC581 isolate EC581]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=85802 QUE97_RS12750 WP_001130211.1 2057446..2057961(-) (luxS) [Escherichia coli strain EC581 isolate EC581]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment