Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ58_RS16850 Genome accession   NZ_CP147048
Coordinates   3447267..3447896 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 19M19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3442267..3452896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ58_RS16835 (WAZ58_16835) helD 3442509..3444563 (-) 2055 WP_000420533.1 DNA helicase IV -
  WAZ58_RS16840 (WAZ58_16840) yccF 3444686..3445132 (+) 447 WP_001261231.1 YccF domain-containing protein -
  WAZ58_RS16845 (WAZ58_16845) yccS 3445142..3447304 (+) 2163 WP_000875023.1 YccS family putative transporter -
  WAZ58_RS16850 (WAZ58_16850) sxy/tfoX 3447267..3447896 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ58_RS16855 (WAZ58_16855) sulA 3448115..3448624 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WAZ58_RS16860 (WAZ58_16860) ompA 3448981..3450033 (+) 1053 WP_000750419.1 porin OmpA -
  WAZ58_RS16865 (WAZ58_16865) matP 3450109..3450561 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WAZ58_RS16870 (WAZ58_16870) ycbZ 3450747..3452507 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=858013 WAZ58_RS16850 WP_000839153.1 3447267..3447896(-) (sxy/tfoX) [Escherichia coli strain 19M19]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=858013 WAZ58_RS16850 WP_000839153.1 3447267..3447896(-) (sxy/tfoX) [Escherichia coli strain 19M19]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1