Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q2U85_RS06985 Genome accession   NZ_CP130335
Coordinates   1329215..1329538 (-) Length   107 a.a.
NCBI ID   WP_053513383.1    Uniprot ID   A0A9X6Q1W0
Organism   Bacillus cereus strain DW444     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324215..1334538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2U85_RS06960 (Q2U85_06960) - 1324567..1325853 (+) 1287 WP_153587923.1 D-alanyl-D-alanine carboxypeptidase family protein -
  Q2U85_RS06965 (Q2U85_06965) sipW 1326044..1326613 (+) 570 WP_000767792.1 signal peptidase I SipW -
  Q2U85_RS06970 (Q2U85_06970) - 1326674..1327261 (+) 588 WP_000172854.1 CalY family protein -
  Q2U85_RS06975 (Q2U85_06975) - 1327381..1328202 (+) 822 WP_153587922.1 DUF4047 domain-containing protein -
  Q2U85_RS06980 (Q2U85_06980) calY 1328555..1329148 (+) 594 WP_053513385.1 biofilm matrix protein CalY -
  Q2U85_RS06985 (Q2U85_06985) sinR 1329215..1329538 (-) 324 WP_053513383.1 helix-turn-helix domain-containing protein Regulator
  Q2U85_RS06990 (Q2U85_06990) - 1329618..1329752 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  Q2U85_RS06995 (Q2U85_06995) inhA1 1330095..1332485 (+) 2391 WP_088071175.1 M6 family metalloprotease immune inhibitor InhA1 -
  Q2U85_RS07000 (Q2U85_07000) - 1332657..1334024 (+) 1368 WP_088071173.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12308.14 Da        Isoelectric Point: 9.6244

>NTDB_id=857990 Q2U85_RS06985 WP_053513383.1 1329215..1329538(-) (sinR) [Bacillus cereus strain DW444]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETSLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=857990 Q2U85_RS06985 WP_053513383.1 1329215..1329538(-) (sinR) [Bacillus cereus strain DW444]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAGCCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682