Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYY55_RS00375 Genome accession   NZ_CP130331
Coordinates   59179..60555 (-) Length   458 a.a.
NCBI ID   WP_008180607.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain MGMM7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54179..65555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYY55_RS00355 (QYY55_00355) gltX 54764..56221 (-) 1458 WP_258269696.1 glutamate--tRNA ligase -
  QYY55_RS00360 (QYY55_00360) ispF 56310..56786 (-) 477 WP_025116461.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QYY55_RS00365 (QYY55_00365) ispD 57169..57864 (-) 696 WP_258269697.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QYY55_RS00370 (QYY55_00370) - 57877..58962 (-) 1086 WP_036121647.1 PIN/TRAM domain-containing protein -
  QYY55_RS00375 (QYY55_00375) radA 59179..60555 (-) 1377 WP_008180607.1 DNA repair protein RadA Machinery gene
  QYY55_RS00380 (QYY55_00380) - 60647..63091 (-) 2445 WP_069483199.1 ATP-dependent Clp protease ATP-binding subunit -
  QYY55_RS00385 (QYY55_00385) - 63081..64190 (-) 1110 WP_069483198.1 protein arginine kinase -
  QYY55_RS00390 (QYY55_00390) - 64187..64729 (-) 543 WP_025116467.1 UvrB/UvrC motif-containing protein -
  QYY55_RS00395 (QYY55_00395) - 64743..65213 (-) 471 WP_031416734.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50197.03 Da        Isoelectric Point: 7.3825

>NTDB_id=857905 QYY55_RS00375 WP_008180607.1 59179..60555(-) (radA) [Lysinibacillus fusiformis strain MGMM7]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEVIAKGPRGAFQHSATVTQKAIPIIQVEASEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIEEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFVGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRVFIPTSNIGGWDFPQGIEIIGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=857905 QYY55_RS00375 WP_008180607.1 59179..60555(-) (radA) [Lysinibacillus fusiformis strain MGMM7]
TTGGCTAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCGGCAAAATGGATGGGAAGATGTCCAGGCTG
TGGGGAATGGAATAAGATGGTGGAGGAAGTAGAAGTTATTGCGAAAGGACCACGTGGGGCATTCCAGCATTCCGCTACAG
TTACTCAAAAGGCAATTCCTATTATTCAGGTGGAAGCTAGTGAAGAGTCCCGTGTAGCGACAGAAATGGGCGAGCTGAAC
CGCGTGTTAGGTGGTGGTATTGTGCCGGGATCTCTAGTATTAATAGGTGGTGATCCTGGGATTGGGAAATCCACATTATT
ACTACAAGTTTCAGCTTTGCTTTCCAATAAAGGTCATCGTGTACTTTATATTTCTGGTGAGGAATCTATCCGTCAAACGA
AGCTACGTGCGGAGCGTTTGGGGGTAATTTCACAAGAGCTATACATTTATTCCGAAACAAATCTTGAGTTTTTGAATCAA
ACGATTGAGGAAGTACAGCCGAAATTTGTCATTGTCGATTCCATTCAAACCGTCTTTCATCCAGAGGTAACAAGTGCGCC
AGGTAGTGTCTCGCAGGTCCGTGAGTGTACAGCTGAGCTTATGCGAATTGCTAAGACTAAAGGAATTGCGATCTTCTTAG
TTGGGCATGTTACGAAAGAGGGGCAAATTGCAGGGCCTCGTATTTTAGAGCATATGGTGGATACAGTCCTGTATTTTGAA
GGGGAAAGACATCATAATCATCGTATTTTACGAAGTCAAAAGAACCGTTTCGGCTCTACAAATGAAATTGCTATATTTGA
AATGCTACAGGGTGGACTAAAAGAGGTTTTGAACCCATCTGAGCTATTTTTACAGGAACGTTCACAAGGAGCAGCGGGCT
CCACGATTGTTGCCTCAATGGAGGGAACAAGGCCAATTCTCGTTGAAATTCAGTCGCTTGTGACGCCTACCAGCTTTAAT
TACCCTAAACGGATGGCAACAGGGGTTGATCAAAATAGAGTGCAATTGCTAATGGCCGTACTTGAAAAGCGTATGGGCCT
CATGCTACAAGCACAGGATGCATATATTAAAGTTGCTGGTGGTGTAAAATTGGACGAACCCGCCATCGATTTAGCTGTTC
TGACAAGCATCGTTTCTAGCTTTAAGGATCAGGCTGTGCGAGCAACAGATTGCTTTGTTGGTGAGGTAGGTCTGACAGGA
GAGGTGCGTCGAGTATCCCGTATTGAGCAACGTGTCATTGAAGCAGCGAAGCTTGGTTTTAAAAGAGTATTCATTCCTAC
ATCCAATATAGGTGGATGGGATTTTCCACAAGGGATTGAAATTATCGGGGTAGAAACGATAAAGGATGCATTAAATGCCT
GCTTTAGAGAGTTATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(350-432)

AAA domain (AAA_25)

(66-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.925

99.127

0.703
  radA Streptococcus pneumoniae Rx1

63.158

99.563

0.629
  radA Streptococcus pneumoniae D39

63.158

99.563

0.629
  radA Streptococcus pneumoniae R6

63.158

99.563

0.629
  radA Streptococcus pneumoniae TIGR4

63.158

99.563

0.629
  radA Streptococcus mitis NCTC 12261

63.158

99.563

0.629
  radA Streptococcus mitis SK321

63.158

99.563

0.629