Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Q3F87_RS14900 Genome accession   NZ_CP130328
Coordinates   2917542..2917868 (-) Length   108 a.a.
NCBI ID   WP_159123736.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912542..2922868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS14880 (Q3F87_14880) - 2912738..2913397 (-) 660 WP_302700109.1 FHA domain-containing protein -
  Q3F87_RS14885 (Q3F87_14885) gspD 2913460..2915715 (-) 2256 WP_302700110.1 type II secretion system secretin GspD -
  Q3F87_RS14890 (Q3F87_14890) - 2915754..2916611 (-) 858 WP_302700111.1 type II secretion system protein N -
  Q3F87_RS14895 (Q3F87_14895) gspN 2916611..2917354 (-) 744 WP_179991961.1 type II secretion system protein N -
  Q3F87_RS14900 (Q3F87_14900) hns 2917542..2917868 (-) 327 WP_159123736.1 H-NS family nucleoid-associated regulatory protein Regulator
  Q3F87_RS14905 (Q3F87_14905) - 2918021..2918446 (-) 426 WP_302700112.1 thioesterase family protein -
  Q3F87_RS14910 (Q3F87_14910) - 2918454..2919647 (-) 1194 WP_180025222.1 heme biosynthesis protein HemY -
  Q3F87_RS14915 (Q3F87_14915) - 2919654..2920493 (-) 840 WP_302700113.1 hypothetical protein -
  Q3F87_RS14920 (Q3F87_14920) - 2920501..2921268 (-) 768 WP_180017501.1 uroporphyrinogen-III synthase -
  Q3F87_RS14925 (Q3F87_14925) hemC 2921268..2922191 (-) 924 WP_159123732.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12396.17 Da        Isoelectric Point: 5.9497

>NTDB_id=857903 Q3F87_RS14900 WP_159123736.1 2917542..2917868(-) (hns) [Acinetobacter variabilis strain TB2-2B]
MMPDITNLSVEELKRLQAEAESLIALKKDQEIEDAYHQVLDIADRVGLTIEQLLEFGASKRKKTARKSVEPRYRSKSNPE
DTWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=857903 Q3F87_RS14900 WP_159123736.1 2917542..2917868(-) (hns) [Acinetobacter variabilis strain TB2-2B]
ATGATGCCAGATATTACAAATTTATCAGTTGAAGAGTTAAAACGATTACAAGCAGAAGCTGAGTCTTTAATTGCTTTGAA
AAAAGATCAGGAAATTGAAGATGCTTATCATCAGGTATTGGATATTGCCGACAGAGTAGGCTTAACAATTGAACAGCTTC
TTGAATTTGGTGCTTCTAAACGTAAAAAAACTGCACGTAAGTCTGTAGAGCCACGTTATCGCAGTAAAAGCAATCCGGAA
GACACCTGGACTGGTCGCGGTAAACAGCCACGCTGGTTAGTTGCTGAATTAGAGAAAGGCGCAAAACTGGAAGATTTCGT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778