Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   Q3F87_RS14595 Genome accession   NZ_CP130328
Coordinates   2845526..2847748 (+) Length   740 a.a.
NCBI ID   WP_180018224.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2840526..2852748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS14575 (Q3F87_14575) lnt 2841330..2842889 (+) 1560 WP_302700088.1 apolipoprotein N-acyltransferase -
  Q3F87_RS14580 (Q3F87_14580) - 2842983..2843318 (-) 336 WP_034705833.1 hypothetical protein -
  Q3F87_RS14585 (Q3F87_14585) gspG 2843603..2844037 (-) 435 WP_051065360.1 type II secretion system major pseudopilin GspG -
  Q3F87_RS14590 (Q3F87_14590) gspF 2844171..2845376 (-) 1206 WP_034705070.1 type II secretion system inner membrane protein GspF -
  Q3F87_RS14595 (Q3F87_14595) priA 2845526..2847748 (+) 2223 WP_180018224.1 primosomal protein N' Machinery gene
  Q3F87_RS14600 (Q3F87_14600) - 2847822..2849678 (+) 1857 WP_302700090.1 cation:proton antiporter -
  Q3F87_RS14605 (Q3F87_14605) hslO 2849729..2850604 (+) 876 WP_004781734.1 Hsp33 family molecular chaperone HslO -
  Q3F87_RS14610 (Q3F87_14610) - 2850822..2851271 (+) 450 WP_302700092.1 DUF2147 domain-containing protein -
  Q3F87_RS14615 (Q3F87_14615) - 2851549..2852010 (+) 462 WP_302700681.1 DUF2147 domain-containing protein -
  Q3F87_RS14620 (Q3F87_14620) - 2852198..2852659 (+) 462 WP_125278813.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83776.71 Da        Isoelectric Point: 8.5518

>NTDB_id=857902 Q3F87_RS14595 WP_180018224.1 2845526..2847748(+) (priA) [Acinetobacter variabilis strain TB2-2B]
MPNSVPVTAPIYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVITEKLPLDAPIDPSFKLKAITELL
DDRAIINSQVLSVLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANPEQKHAIQQVLKYRKQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQAQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWQNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=857902 Q3F87_RS14595 WP_180018224.1 2845526..2847748(+) (priA) [Acinetobacter variabilis strain TB2-2B]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTATTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGTGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTGATTACTGAAAAATTACCGCTAGATGCTCCGATTGATCCCAGTTTCAAACTGAAAGCAATTACCGAGCTTTTA
GATGACCGTGCCATTATCAATTCCCAGGTTTTAAGTGTATTGACCTGGTCAGCACAGTATTACCAGTTTCCTATCGGGGA
AGTGATCCAGACTGCCTTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAGGTTCGCCGTTCCGAGAGGCAACAGGAAGCCTATCGGATTCTAAAACTACATCCGGTGGGA
ACAACTGAGAATCTCTTAAATCTGGCCGGAATAGAAACAGCGACTTTAAAAGCGCTCGAAAAAAAAGGGATTTGCGAATG
TGTACTGGAAGCACAGGATTTTAGCCCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATCCGGAACAAAAGC
ATGCGATTCAGCAAGTGCTGAAATACCGCAAGCAATATCAGGCCTTTTTACTTGATGGCCTGACTGGCAGCGGCAAAACT
GAAGTCTATCTTCAGATCATGGAACAAGTACTTAAACAGGGCAAGCAGGTACTGGTACTAGTACCTGAAATCGGACTGAC
GCCACAAACGATTAGCCGCTTTCAGTCACGTTTCCATTGTCATATTGCCCTGCTTCACTCTGGCCTGAATGACAGTAAAC
GCTTACAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCTTCCATTGTGCTTGGCACCCGTTCTGCGATTTATACACCGATG
CCGAATCTGGGTTTGATCATTCTGGATGAAGAGCATGACCTGTCTTTTAAACAGCAGGAAGGCTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTCCTCTTGGGTTCGGCAACACCCAGCATTGACAGTTATG
CACTGGTGCAGCAAGGTAAAATGCAGGTACTGGAACTGAATCAACGCGCGGGTACAGCGCTAATGCCGAAAATCCATATT
CTGGATTTAAAAGTAGCGCCAAAGCAGCATGGCATCAGCCTGCATCTGATTGAAGAAATCAAAAAGCGCCTGGCTAAAAA
AGAACAGGTACTCATTTTCCTGAATCGTCGTGGTTATGCGCCCGTACTGATTTGTGGCAGTTGTGGCTGGCAGGCGCAGT
GTCCGAACTGTGATGCCAATTTCACTGTGCACCGGCAACCTTATCAACATCTGCATTGTCATCATTGCGGCACCATTCAT
CGTATGCCTGAACAGTGTCCGCAATGCCAGCATCAGGAGTTGGCCACTTTAGGCATGGGGACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTTTGAAGTGATCCGGGTCGATCGCGACTCAACCAGCCGGGTCGGTAGTTGGCAAAAGA
TCTATGACAAGATTCAGAAAAGTGAGCCTGCGATTCTGCTCGGCACGCAGATGCTCGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTTGCAATTTTGGATATCGATTCTGGTCTTCTTAGCGTTGATTTCCGGGCCACAGAACGTACAGCACAATT
GATCGTACAGGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGGGATGTATATTTACAGACCCTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGCGCTTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
TGCCCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCCATTCCTGCCCCGATGGAACGCAAAGCCGGAC
GCTATCAATCCCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCAAAACCTG
TTACAGGATAAGCCATCCAATATGAAGCTGACACTGGATATCGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.47

100

0.726