Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   Q3F87_RS13490 Genome accession   NZ_CP130328
Coordinates   2610631..2611431 (-) Length   266 a.a.
NCBI ID   WP_005232134.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2605631..2616431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS13470 (Q3F87_13470) - 2606682..2607380 (-) 699 WP_302700026.1 tetratricopeptide repeat protein -
  Q3F87_RS13475 (Q3F87_13475) hisS 2607411..2608706 (-) 1296 WP_179992373.1 histidine--tRNA ligase -
  Q3F87_RS13480 (Q3F87_13480) ispG 2608710..2609831 (-) 1122 WP_302700027.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  Q3F87_RS13485 (Q3F87_13485) - 2609855..2610640 (-) 786 WP_302700028.1 helix-turn-helix domain-containing protein -
  Q3F87_RS13490 (Q3F87_13490) pilF 2610631..2611431 (-) 801 WP_005232134.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  Q3F87_RS13495 (Q3F87_13495) rlmN 2611446..2612681 (-) 1236 WP_005232136.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  Q3F87_RS13500 (Q3F87_13500) ndk 2612803..2613234 (-) 432 WP_004782097.1 nucleoside-diphosphate kinase -
  Q3F87_RS13505 (Q3F87_13505) iscX 2613345..2613545 (-) 201 WP_005232138.1 Fe-S cluster assembly protein IscX -
  Q3F87_RS13510 (Q3F87_13510) - 2613634..2614185 (-) 552 WP_004782094.1 phosphatase PAP2 family protein -
  Q3F87_RS13515 (Q3F87_13515) ilvC 2615353..2616369 (-) 1017 WP_004782092.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29990.11 Da        Isoelectric Point: 9.0592

>NTDB_id=857898 Q3F87_RS13490 WP_005232134.1 2610631..2611431(-) (pilF) [Acinetobacter variabilis strain TB2-2B]
MSNLTSKLALVSVVCGSLVLTACQTPDLGQKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVL
LQQEGSKPNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDL
VNAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFVRGVGQKNQSARALWIGIRTARASGDQLGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=857898 Q3F87_RS13490 WP_005232134.1 2610631..2611431(-) (pilF) [Acinetobacter variabilis strain TB2-2B]
TTGAGTAATCTGACATCTAAACTTGCTTTGGTTTCAGTAGTATGTGGGTCTTTGGTTTTAACTGCGTGTCAAACGCCAGA
TCTGGGTCAGAAGGACCCGGAAAAAGCCACCAAGGTTCGTACTCAGTTGGCGGTTGAATATCTTAAAAACGGTGATCTGG
ATTCAGCTAAACGTGCGCTGGATCAGGCACTGGAAACTAATCCGCGTGATTCGCAAGCCAATATGATGATGGGCGTGCTG
CTTCAGCAGGAAGGCAGCAAACCTAATCTTGAAAAGGCCGAAGGTTATTTCAAGCGTGCAATTTCGGCAGATCCAAAAAA
TGCCCAGGCACGAAATAACTACGGCACCTATTTATATCAGCTTGAGCGCTATAAAGATGCGATCGAGCAGTTCGAAATTG
CCGGCGCAACTTTAGGTTATGACCAGCGATTTCGTGCCCTTGAAAATATGGGACGGATTTACCTGAAACAGGGTGATTTG
GTGAATGCTGAAAAATCATTCAAACAGGCACTACAGGCTAATCGCGCTTCGTATATATCAATGTTAGAGTTGGCAGAAAT
TTTTTATCTGAACCAGCAGTTCCCGGCCGCGACTCAAATGTATGAACAGTTTGTACGTGGCGTGGGGCAGAAAAACCAGA
GTGCCCGTGCGCTCTGGATTGGCATTCGCACTGCGCGTGCCAGTGGCGATCAGTTAGGCATGCAGGTATTGGTAAATCAA
TTACGTGCATTGTTCCCTGAAAGCCCGGAATACCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATGGAAGTA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(145-174)

Tetratricopeptide repeat (TPR_14)

(40-79)

Tetratricopeptide repeat (TPR_16)

(89-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

76.692

100

0.767
  pilF Acinetobacter baylyi ADP1

69.663

100

0.699