Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   Q3F87_RS03385 Genome accession   NZ_CP130328
Coordinates   512435..513292 (+) Length   285 a.a.
NCBI ID   WP_171284737.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507435..518292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS03360 (Q3F87_03360) - 507807..508910 (+) 1104 Protein_472 CsgG/HfaB family protein -
  Q3F87_RS03365 (Q3F87_03365) - 508997..509671 (+) 675 WP_180012349.1 hypothetical protein -
  Q3F87_RS03370 (Q3F87_03370) - 509954..510529 (-) 576 WP_004786836.1 xanthine phosphoribosyltransferase -
  Q3F87_RS03375 (Q3F87_03375) - 510620..511333 (-) 714 WP_104425708.1 DUF3108 domain-containing protein -
  Q3F87_RS03380 (Q3F87_03380) - 511487..512173 (-) 687 WP_004786832.1 hypothetical protein -
  Q3F87_RS03385 (Q3F87_03385) tonB2 512435..513292 (+) 858 WP_171284737.1 energy transducer TonB Machinery gene
  Q3F87_RS03390 (Q3F87_03390) - 513289..513690 (-) 402 WP_104425710.1 hypothetical protein -
  Q3F87_RS03395 (Q3F87_03395) - 513849..514148 (-) 300 WP_125279719.1 antibiotic biosynthesis monooxygenase -
  Q3F87_RS03400 (Q3F87_03400) ybeY 514241..514723 (-) 483 WP_159122610.1 rRNA maturation RNase YbeY -
  Q3F87_RS03405 (Q3F87_03405) - 514758..515834 (-) 1077 WP_004786823.1 PhoH family protein -
  Q3F87_RS03410 (Q3F87_03410) miaB 515873..517330 (-) 1458 WP_302700380.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32771.18 Da        Isoelectric Point: 6.1603

>NTDB_id=857883 Q3F87_RS03385 WP_171284737.1 512435..513292(+) (tonB2) [Acinetobacter variabilis strain TB2-2B]
MPLVKAWWKDPIFNSAVFAAVILHVIFLTLEFGMPQDQESMTKEIAVSIRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHNLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=857883 Q3F87_RS03385 WP_171284737.1 512435..513292(+) (tonB2) [Acinetobacter variabilis strain TB2-2B]
ATGCCTCTGGTCAAAGCCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCACGTAATTTT
TCTCACGCTGGAATTTGGTATGCCACAAGATCAGGAGAGCATGACCAAAGAAATTGCAGTCAGTATTCGTCAAACTGATG
AAAAAATTGAGCATGCAGATTTTCTGGCTCAAACTGACCAGCAAGGTTCAGGTAAATTTCGTGAAGCACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACCGGAGAAGAACAGCAAGAAAGTCCGGACATGTTGCAACAACAGCG
CGAATTAAGCTTTGAAGAAAAAGTACTGATGACGACTTTAAGCTGGCAAAAACAGGCGGAAGAAAATCAGCGCAAAAAAA
TGCAGGAACAGTTACAAAGTCAGTTTCAGGCCAAAGCCGCTATGGTAGCCAGTCTGGAAGCCCAATATCTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGCATCCAGTCCAAACAGGATGTTTCTGCAGCTTATCTGGA
AAAATTCCGTCAGAAAGTGGAGTTCTATGGTAACCGCTATTATCCAGACGCTGCCAAACAGCAGAATCTGGCAGGAGAGG
TGCGCTTGATGGTGATCTTGAACCAGAACGGCGGAATCCGTGCAATTCGCTTAATTGACAGTTCAGGGCATAATTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGCAAGGCAGCACCATTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGCT
GAGAATTATTCGAACCTGGCGTTTTGATCCGGCTGAAGCGGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.835

97.895

0.723