Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   Q3F87_RS01910 Genome accession   NZ_CP130328
Coordinates   221315..222469 (-) Length   384 a.a.
NCBI ID   WP_104426934.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 216315..227469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS01885 (Q3F87_01885) - 216744..217289 (-) 546 WP_302700273.1 glutathione peroxidase -
  Q3F87_RS01890 (Q3F87_01890) - 217464..218009 (-) 546 WP_104426931.1 glutathione peroxidase -
  Q3F87_RS01895 (Q3F87_01895) - 218201..219112 (+) 912 WP_034705680.1 DMT family transporter -
  Q3F87_RS01900 (Q3F87_01900) - 219508..220077 (-) 570 WP_302700274.1 L-threonylcarbamoyladenylate synthase -
  Q3F87_RS01905 (Q3F87_01905) dprA 220118..221257 (-) 1140 WP_302700276.1 DNA-processing protein DprA Machinery gene
  Q3F87_RS01910 (Q3F87_01910) tsaP 221315..222469 (-) 1155 WP_104426934.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  Q3F87_RS01915 (Q3F87_01915) def 222590..223120 (+) 531 WP_004780730.1 peptide deformylase -
  Q3F87_RS01920 (Q3F87_01920) - 223213..223623 (+) 411 WP_005233427.1 DUF2946 family protein -
  Q3F87_RS01925 (Q3F87_01925) - 223695..225725 (+) 2031 WP_302700277.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42010.20 Da        Isoelectric Point: 9.0542

>NTDB_id=857867 Q3F87_RS01910 WP_104426934.1 221315..222469(-) (tsaP) [Acinetobacter variabilis strain TB2-2B]
MKKVLKGMPFFSALGLKNQMLALAVCVGVSMGTMYSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYIGSTSLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTIVAADSVQGTPYILGTADQRVLAGKGQKVYARGNGLVVGQRYAVYREADPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENTVAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLESELPIKVGANIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=857867 Q3F87_RS01910 WP_104426934.1 221315..222469(-) (tsaP) [Acinetobacter variabilis strain TB2-2B]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTAAAAAATCAAATGCTCGCACTGGCAGTTTGTGT
CGGAGTGAGTATGGGGACAATGTATTCAGCCGAGGCAGCTCCTGCCCGCAACGTCAATCCACCTGCTTTAAAAGCCAGTG
CGCCTAATGTCTACGTGGTCAAAAAAGGCGATACATTGTGGGATATTTCAAAACGTTTCTTAAAAAATCCGGTGCGTTGG
CCAGAAATCTGGGCCAGTAACAAGCACGTGAAAAATCCACATTGGATTTTTCCAGGTGATCGCCTGTTGATGTGTGACTA
TCAAGGTCGTCCAATTATCGGTAAAGACGAAGGTGATGGCTGTGAAGGTATCATCAGTCGTTATATCGGTAGTACTTCAT
TACAACCACAGGTTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCATTAGCGCATATCCAGCAATGGCTGGAA
CGCTATACCATTGTGGCAGCTGATTCAGTTCAGGGTACGCCTTACATTCTCGGCACTGCAGACCAGCGCGTACTGGCCGG
TAAAGGCCAGAAGGTCTATGCACGCGGCAATGGTTTGGTGGTTGGCCAGCGTTATGCGGTGTATCGTGAGGCAGACCCTT
ATGTCTTTACCGATGCCAATGGCAAGAAATACACGGCTGCTCTAGAGCTGCAACAGGTTGCTTCCGGAATCGCAGTACGT
GGCGAAGGTGATGTCACCACGCTGGAATTGACAGATAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTATTACCTGA
ATACGATCCGATGTTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAATACGGTTGCTGGTGGTCAGATTGTGCGTGTAC
TGGGTTCAATTGGTACAGCAGCACGTCATAGTGTCGTGACGATTGACCGTGGTACGGCACATGGGGTTCAGACTGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTCGTGACTGATCCGAAAACCAAAGAGCGCGTACAGCTTCCAGGTGAGCGCAT
TGGCAATGTGATGGTCTTTAAAACTTTTGACCAGCTGAGCTATGCTTATGTTCTGGAAAGTGAGTTACCTATCAAGGTGG
GTGCCAATATTCAAGCGCCATTGTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.532

100

0.677