Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   WAZ56_RS01575 Genome accession   NZ_CP147044
Coordinates   320951..322228 (+) Length   425 a.a.
NCBI ID   WP_115186989.1    Uniprot ID   -
Organism   Escherichia coli strain 20A24     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 315951..327228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ56_RS01560 (WAZ56_01560) - 316466..318142 (+) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -
  WAZ56_RS01565 (WAZ56_01565) kdsB 318152..318892 (+) 741 WP_113465320.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WAZ56_RS01570 (WAZ56_01570) - 318889..320916 (+) 2028 WP_113465319.1 capsular polysaccharide biosynthesis protein -
  WAZ56_RS01575 (WAZ56_01575) kpsS 320951..322228 (+) 1278 WP_115186989.1 capsular biosynthesis protein Regulator
  WAZ56_RS01580 (WAZ56_01580) - 322339..323805 (-) 1467 WP_001301076.1 glycosyltransferase family A protein -
  WAZ56_RS01585 (WAZ56_01585) - 323808..324977 (-) 1170 WP_000704910.1 nucleotide sugar dehydrogenase -
  WAZ56_RS01590 (WAZ56_01590) - 325115..326242 (-) 1128 WP_094338843.1 polysaccharide pyruvyl transferase family protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 50977.30 Da        Isoelectric Point: 10.2834

>NTDB_id=857798 WAZ56_RS01575 WP_115186989.1 320951..322228(+) (kpsS) [Escherichia coli strain 20A24]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPWLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVIYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKI
KKIKKIKKIKKIVLCYQKKHHNEWH

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=857798 WAZ56_RS01575 WP_115186989.1 320951..322228(+) (kpsS) [Escherichia coli strain 20A24]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGTGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATATACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAGATA
AAAAAGATAAAAAAGATAAAAAAGATAAAAAAGATAGTATTATGCTATCAAAAAAAACATCACAATGAATGGCATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.899

93.176

0.372