Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q3C38_RS08775 Genome accession   NZ_CP130320
Coordinates   1957615..1959399 (+) Length   594 a.a.
NCBI ID   WP_066125424.1    Uniprot ID   -
Organism   Globicatella sanguinis strain UMB2445     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952615..1964399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3C38_RS08760 (Q3C38_08760) - 1953520..1955064 (+) 1545 WP_101813602.1 ABC-F family ATP-binding cassette domain-containing protein -
  Q3C38_RS08765 (Q3C38_08765) - 1955398..1955862 (+) 465 WP_101813601.1 MarR family winged helix-turn-helix transcriptional regulator -
  Q3C38_RS08770 (Q3C38_08770) rcrP 1955856..1957622 (+) 1767 WP_101813600.1 ABC transporter ATP-binding protein Regulator
  Q3C38_RS08775 (Q3C38_08775) rcrQ 1957615..1959399 (+) 1785 WP_066125424.1 ABC transporter ATP-binding protein Regulator
  Q3C38_RS08780 (Q3C38_08780) - 1959586..1960056 (-) 471 WP_066125426.1 glutathione peroxidase -
  Q3C38_RS08785 (Q3C38_08785) - 1960280..1960999 (-) 720 WP_066125427.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q3C38_RS08790 (Q3C38_08790) - 1961479..1962894 (+) 1416 WP_066125429.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65628.96 Da        Isoelectric Point: 5.1241

>NTDB_id=857771 Q3C38_RS08775 WP_066125424.1 1957615..1959399(+) (rcrQ) [Globicatella sanguinis strain UMB2445]
MAKEQPQSEKALKRALRYADGYLIPIVIALIFSIISSVITVIGPDKMSEMMDVITQGVMVGIDLNKIDKIGKTLVILYLT
AAVMGYAQSFIVATISQRYTQRLRRAIAEKMNRLPLRYFDSRPTGDVLSIITNDLDTVGQSLNQSLGTLVSATVLLIGTL
FMMFKTNWVMALTAISSVFIGFIGMVFIMSKSRAHFKAQQKNLATVNGYIEEAYTGLSIVSSYNAADEMKGQFAKLNEQL
YGSAWKSQFLGGMMMPLMAFIGNFGYVMVSLMGAYLVLNGHITIGVIIAFMVYVRLFSQPLSQIAQAAQSLQSAGAALGR
VMDYLEADEMSDESYKTTQLSQIKGQVAFEHVNFGYDEGKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVN
GGQILIDGVNIKDMTRAELHEYFSMVLQDTWLFEGSIRDNLVFNQPEVTQEEVIKAAKAVGIHHFITTLPQGYDTVLDDS
VQLSVGQKQLMTIARALIKDAPLLILDEATSSVDTRTEELIQKAMDALMVGRTSFVIAHRLSTIRNADLILVMKDGNIIE
QGNHDQLMVQDGFYADLYNSQFENGNGTFEEEEL

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=857771 Q3C38_RS08775 WP_066125424.1 1957615..1959399(+) (rcrQ) [Globicatella sanguinis strain UMB2445]
ATGGCTAAAGAACAACCACAATCAGAAAAAGCCCTAAAACGTGCTTTACGGTATGCCGATGGCTATTTAATTCCCATCGT
TATTGCCTTAATTTTCTCAATTATTAGTAGTGTTATCACCGTTATCGGACCTGATAAAATGAGTGAAATGATGGATGTCA
TTACTCAGGGAGTGATGGTTGGTATTGACTTAAATAAAATTGATAAAATAGGAAAAACATTAGTCATCTTGTATTTAACG
GCAGCGGTCATGGGGTATGCACAAAGCTTTATTGTGGCAACTATTTCACAACGCTATACCCAACGCCTTCGTCGTGCAAT
CGCTGAAAAGATGAATCGCCTTCCTTTACGATACTTTGATAGCCGTCCAACCGGTGATGTTTTATCCATTATTACCAATG
ACTTGGATACTGTTGGTCAAAGCTTAAATCAAAGTTTAGGAACATTAGTTTCAGCAACAGTTTTATTAATCGGTACATTA
TTTATGATGTTTAAAACGAATTGGGTAATGGCTCTTACAGCAATCAGTTCAGTTTTTATTGGTTTTATTGGAATGGTCTT
TATTATGAGTAAATCTCGTGCTCATTTTAAGGCGCAGCAAAAGAACTTAGCTACTGTCAATGGCTATATCGAAGAAGCCT
ATACCGGACTCTCGATTGTCAGCAGTTATAATGCAGCCGATGAAATGAAGGGCCAATTTGCAAAATTAAATGAACAATTA
TACGGAAGTGCTTGGAAATCACAATTTTTAGGTGGGATGATGATGCCACTGATGGCTTTCATCGGGAACTTCGGTTATGT
GATGGTTAGTTTAATGGGTGCTTACCTAGTTTTAAATGGGCACATTACCATCGGGGTCATAATTGCCTTTATGGTGTACG
TTCGTTTATTCTCACAACCATTATCCCAAATTGCTCAAGCGGCACAAAGCTTACAATCAGCTGGGGCAGCCTTAGGTCGA
GTGATGGACTATTTAGAGGCAGACGAAATGAGTGACGAATCGTATAAAACAACCCAATTATCACAAATTAAAGGACAGGT
TGCCTTCGAACATGTTAATTTTGGCTATGATGAAGGTAAAACGATTATTCATGATTTCTCTGCCGAAGCTAAAGCGGGTC
AAAAAATCGCGATTGTTGGTCCAACCGGTGCTGGTAAAACAACGATTGTTAACTTATTGATGCGCTTCTATGAAGTCAAT
GGCGGTCAAATTTTAATCGATGGTGTCAATATTAAAGACATGACTCGTGCTGAATTGCATGAATATTTCAGTATGGTATT
ACAGGATACTTGGTTATTTGAAGGTAGCATTCGCGATAATTTAGTATTCAATCAACCAGAGGTTACACAAGAAGAAGTGA
TAAAGGCAGCCAAAGCGGTGGGGATTCATCATTTTATTACCACATTACCTCAAGGTTATGACACGGTATTGGATGATTCC
GTTCAATTATCAGTAGGACAAAAACAATTAATGACCATTGCCCGTGCGTTAATAAAAGATGCTCCATTATTAATTTTAGA
TGAAGCGACGAGCTCAGTGGATACTCGTACGGAAGAATTAATTCAAAAAGCAATGGATGCCTTAATGGTTGGTCGGACCT
CATTTGTCATTGCTCATCGACTTTCAACCATTCGTAATGCTGACTTAATATTAGTAATGAAAGACGGAAATATTATCGAA
CAAGGTAATCACGATCAATTAATGGTTCAAGACGGCTTTTATGCGGACTTATATAATAGTCAGTTTGAGAATGGTAATGG
CACCTTTGAGGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-301)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

64.533

97.306

0.628