Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q3C38_RS08770 Genome accession   NZ_CP130320
Coordinates   1955856..1957622 (+) Length   588 a.a.
NCBI ID   WP_101813600.1    Uniprot ID   -
Organism   Globicatella sanguinis strain UMB2445     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950856..1962622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3C38_RS08750 (Q3C38_08750) - 1950916..1952109 (+) 1194 WP_284629378.1 homoserine dehydrogenase -
  Q3C38_RS08755 (Q3C38_08755) thrB 1952110..1952988 (+) 879 WP_101813603.1 homoserine kinase -
  Q3C38_RS08760 (Q3C38_08760) - 1953520..1955064 (+) 1545 WP_101813602.1 ABC-F family ATP-binding cassette domain-containing protein -
  Q3C38_RS08765 (Q3C38_08765) - 1955398..1955862 (+) 465 WP_101813601.1 MarR family winged helix-turn-helix transcriptional regulator -
  Q3C38_RS08770 (Q3C38_08770) rcrP 1955856..1957622 (+) 1767 WP_101813600.1 ABC transporter ATP-binding protein Regulator
  Q3C38_RS08775 (Q3C38_08775) rcrQ 1957615..1959399 (+) 1785 WP_066125424.1 ABC transporter ATP-binding protein Regulator
  Q3C38_RS08780 (Q3C38_08780) - 1959586..1960056 (-) 471 WP_066125426.1 glutathione peroxidase -
  Q3C38_RS08785 (Q3C38_08785) - 1960280..1960999 (-) 720 WP_066125427.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65279.34 Da        Isoelectric Point: 9.2731

>NTDB_id=857770 Q3C38_RS08770 WP_101813600.1 1955856..1957622(+) (rcrP) [Globicatella sanguinis strain UMB2445]
MLKIFKRMNRKEVMMAVVSVLFIMAQVWLDLKVPDYMSEVTKKLVTPGTELKELYQPGGMMLLLSLLSFATSLLVGFLAA
RLGASFTRSLRRDVFEHVLSFSAKETQSFSVPSLITRTTNDIIQLQMLIAIGLQVMVKGPIMAGWAMVKISNKNGQWMLA
TALAVLLLLIVITIIMVLAFPKQKMIQKLTDKLNAISRENLTGIRVIRAYNAEKFRNEKFDVANSELTDTNLFSMRIFSL
MMPLMTIVSSGLSLSVYWIGAYLIQNAALNMKITLFGDMAVFTSYAMQVVMGFMMMTMIFVMLPRAIVSAKRINEVLETH
SVIDYPATTKTNNQANEYVLEYENVTFKYSDSAEPVISNVSFKAKKGQTIAFIGSTGSGKSTLINLLPRFYDVTSGAIKL
NGQNIKEIAHDDLNNRVGYIPQKAVIFSGTIASNLNFGESNESPLTEEKMNAALELAQAKEFVLSKENGLQSTVAQEGAN
FSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDKALRHDLAVQTADMTKLIVAQRISTIMDADLILVLDQGEVVGQG
THQELLANNEVYQEIAYSQLSKEELTNG

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=857770 Q3C38_RS08770 WP_101813600.1 1955856..1957622(+) (rcrP) [Globicatella sanguinis strain UMB2445]
ATGTTAAAAATATTCAAACGAATGAATAGAAAAGAAGTGATGATGGCTGTCGTCAGTGTTCTATTCATTATGGCCCAAGT
CTGGTTAGATTTAAAAGTACCAGATTATATGTCAGAAGTGACCAAAAAATTAGTGACGCCAGGTACAGAACTTAAAGAGC
TCTATCAACCTGGAGGGATGATGTTACTCTTATCATTATTAAGTTTTGCGACCAGTCTATTAGTTGGCTTTTTAGCAGCT
CGATTGGGAGCTAGTTTTACACGTTCGTTAAGACGTGATGTTTTTGAACATGTGTTAAGTTTCTCAGCTAAGGAAACACA
AAGCTTTTCAGTCCCAAGTTTAATTACGCGTACAACCAATGATATTATTCAATTACAAATGTTAATTGCCATTGGTTTGC
AAGTAATGGTCAAAGGACCCATTATGGCCGGCTGGGCGATGGTTAAAATATCTAACAAAAATGGTCAATGGATGTTAGCA
ACCGCATTAGCCGTACTTTTACTATTAATTGTTATTACCATTATTATGGTATTGGCTTTTCCAAAGCAAAAAATGATCCA
AAAATTAACCGATAAGTTGAATGCTATCTCACGTGAAAACTTAACAGGGATACGTGTCATTCGAGCTTACAATGCTGAAA
AATTTCGCAATGAGAAATTTGATGTTGCCAACAGTGAATTGACCGATACCAATTTGTTCTCAATGCGAATATTCTCATTA
ATGATGCCATTAATGACGATAGTATCTAGTGGGTTATCGTTATCGGTTTATTGGATTGGGGCTTATCTCATTCAAAATGC
AGCTTTAAATATGAAAATAACACTCTTTGGCGATATGGCAGTCTTTACTTCTTATGCGATGCAAGTGGTCATGGGGTTCA
TGATGATGACGATGATTTTTGTCATGCTACCAAGAGCGATTGTGTCTGCTAAACGTATTAATGAAGTATTAGAGACGCAT
TCTGTGATTGACTATCCTGCAACAACCAAAACGAACAATCAAGCAAATGAATATGTTTTAGAATATGAAAATGTAACCTT
TAAATATAGTGATAGTGCTGAACCTGTTATTTCGAATGTTAGCTTCAAGGCTAAAAAGGGACAAACAATTGCCTTTATCG
GTTCCACAGGTAGTGGTAAGAGTACCTTAATTAATTTATTACCACGTTTTTACGATGTGACCAGTGGTGCTATTAAGTTA
AATGGACAAAACATCAAAGAGATTGCCCATGATGATTTAAATAATAGGGTGGGGTATATACCACAAAAAGCCGTCATCTT
TAGTGGAACCATTGCTTCTAATTTGAATTTTGGTGAAAGTAATGAATCGCCATTAACGGAAGAAAAAATGAATGCGGCTT
TAGAGTTAGCACAAGCTAAAGAATTTGTATTAAGTAAAGAAAACGGCTTGCAATCAACAGTGGCCCAAGAAGGTGCAAAT
TTCTCAGGGGGTCAAAAACAACGACTAGCAATTGCCCGTGCGTTAGCGCGCAAACCAGAAATTTTAATATTCGATGATTC
CTTCTCAGCTTTAGACTATAAAACGGATAAAGCGTTGAGACATGATTTAGCAGTTCAAACGGCTGATATGACGAAGTTAA
TTGTCGCGCAACGTATTTCAACCATTATGGATGCAGATTTAATCTTAGTATTGGATCAAGGGGAAGTAGTCGGTCAAGGT
ACACATCAAGAATTATTAGCTAATAATGAAGTGTATCAAGAAATTGCCTACTCACAATTATCAAAGGAGGAATTAACCAA
TGGCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-291)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

59.333

100

0.605