Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ52_RS06190 Genome accession   NZ_CP147038
Coordinates   1160460..1161089 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 21F61     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155460..1166089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ52_RS06175 (WAZ52_06175) helD 1155702..1157756 (-) 2055 WP_001317751.1 DNA helicase IV -
  WAZ52_RS06180 (WAZ52_06180) yccF 1157879..1158325 (+) 447 WP_001261236.1 YccF domain-containing protein -
  WAZ52_RS06185 (WAZ52_06185) yccS 1158335..1160497 (+) 2163 WP_000875041.1 YccS family putative transporter -
  WAZ52_RS06190 (WAZ52_06190) sxy/tfoX 1160460..1161089 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ52_RS06195 (WAZ52_06195) sulA 1161308..1161817 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  WAZ52_RS06200 (WAZ52_06200) ompA 1162174..1163214 (+) 1041 WP_001314606.1 porin OmpA -
  WAZ52_RS06205 (WAZ52_06205) matP 1163290..1163742 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WAZ52_RS06210 (WAZ52_06210) ycbZ 1163928..1165688 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=857721 WAZ52_RS06190 WP_000839153.1 1160460..1161089(-) (sxy/tfoX) [Escherichia coli strain 21F61]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=857721 WAZ52_RS06190 WP_000839153.1 1160460..1161089(-) (sxy/tfoX) [Escherichia coli strain 21F61]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1