Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   STYK_RS08925 Genome accession   NZ_AP024523
Coordinates   1787817..1789577 (-) Length   586 a.a.
NCBI ID   WP_261804920.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1782817..1794577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS08895 (STYK_17080) - 1783493..1785160 (-) 1668 WP_020902726.1 DAK2 domain-containing protein -
  STYK_RS08900 (STYK_17090) - 1785163..1785528 (-) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  STYK_RS08905 (STYK_17100) rpmB 1785684..1785872 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  STYK_RS08910 (STYK_17110) - 1785979..1786653 (-) 675 WP_261089778.1 LiaF transmembrane domain-containing protein -
  STYK_RS08915 (STYK_17120) - 1786658..1787104 (-) 447 WP_070528641.1 LytTR family DNA-binding domain-containing protein -
  STYK_RS08920 (STYK_17130) - 1787218..1787721 (-) 504 WP_261804919.1 phosphatase PAP2 family protein -
  STYK_RS08925 (STYK_17140) rcrQ 1787817..1789577 (-) 1761 WP_261804920.1 ABC transporter ATP-binding protein Regulator
  STYK_RS08930 (STYK_17150) rcrP 1789567..1791336 (-) 1770 WP_261804921.1 ABC transporter ATP-binding protein Regulator
  STYK_RS08935 (STYK_17160) - 1791311..1791781 (-) 471 WP_261804922.1 MarR family winged helix-turn-helix transcriptional regulator -
  STYK_RS08940 (STYK_17170) - 1791995..1792640 (+) 646 Protein_1712 DUF4190 domain-containing protein -
  STYK_RS08945 (STYK_17180) - 1792690..1793406 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64846.47 Da        Isoelectric Point: 4.9846

>NTDB_id=85765 STYK_RS08925 WP_261804920.1 1787817..1789577(-) (rcrQ) [Streptococcus toyakuensis strain TP1632]
MENKKMSLWKQSKPYLAGLQFALLIAFLATIVSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRRAVAEKINHLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSTLLVVAVLVTM
FGMNWILALVTVVSTFVGFAFVSVFMGKSQSFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFSRLNHRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMEDESHKERQLSDMKGQVAFERVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYELDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKDISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTVRNADLILVMKNGNIIEQGN
HDELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=85765 STYK_RS08925 WP_261804920.1 1787817..1789577(-) (rcrQ) [Streptococcus toyakuensis strain TP1632]
ATGGAAAATAAGAAAATGTCTCTTTGGAAACAAAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTGATCGCCTT
TCTAGCAACAATCGTATCCAATATCATTACTGTTTATGGTCCAACTCGTATCAAGGAAATGACCAATATCATTGCAAGTG
GCCTGGAAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATTGGACTCCTA
TCAAATTATTTGCAGGCCTTTCTGTTTACAACAGCTATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCGGTTGCAGAGAA
AATCAATCACCTACCATTGGGATATTTTGATGGACATTCTCAAGGAGATACCTTGTCTCGTGTGACCAATGATGTTGATA
CTGCAGCCCAGTCCCTTAATCAAAGTCTGGGAACAGTTCTTTCATCCACTTTACTGGTCGTGGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTTTCAACTTTTGTTGGATTTGCTTTCGTGTCTGTCTTTATGGG
CAAATCCCAGAGCTTCTTTAAGAGTCAGCAACAGGATTTGGCAGCTGTAAATGGTTATGTGGAAGAAATGTACTCTGGCC
ATAATGTAGTGACCAGCTACAATGCTATCGAGAGCACGAAAGAAGAGTTTTCGAGATTAAACCATCGCCTGTATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATTGTTGGTGCAGCTTTGGCTCTGAATGGGCAGATTAGTATTGGAATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCTCTTTCACAAATTGCCCAAGGAATTACTAGTTTGCAGCAGGCTAGTGCAGCCATGGGACGCGTCTTCGAA
TTCCTAGCTGAAGAGGAAATGGAAGACGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTAGCCTTTGA
ACGAGTCTCCTTTGGTTATACACCAGAGCGAACTATCATCCATGACTTTTCTGCGACCGCTCATGCAGGTCAAAAGGTTG
CCATTGTTGGACCGACCGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGCTTGATAAGGGAAGT
ATCCGTATCGATGGTGTGGACACCAAGGAGATGAAGCGTTCGGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTATTTGAAGGCACTATCCGAGACAATCTCATCTATAACCAAAAGGATATTAGTGATGAGCGCGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATCATGACACTACCAGATGGTTACGATACCGTCTTGGATGATACAGTGACCTTG
TCTGTCGGACAAAAACAACTCTTGACTATCGCTCGTGCTTTGCTGAAAGATGCGCCACTCCTAATCCTAGATGAGGCGAC
TTCTTCTGTTGATACCCGTACAGAGGAATTGATTCAGAAAGCCATGGATCGTTTGATGGAGGGAAGAACTTCCTTTGTCA
TCGCTCACCGCTTGTCTACCGTCCGAAATGCTGATTTGATTCTTGTTATGAAGAATGGTAATATCATCGAGCAAGGAAAT
CATGATGAGCTGATGGCGCAAGGTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.438

99.659

0.662

Multiple sequence alignment