Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QPK55_RS12295 Genome accession   NZ_CP130284
Coordinates   2396349..2396627 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain Z4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2391349..2401627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK55_RS12275 (QPK55_12275) - 2393023..2393832 (+) 810 WP_000678368.1 papain-like cysteine protease family protein -
  QPK55_RS12280 (QPK55_12280) - 2393858..2394460 (+) 603 WP_000517274.1 hypothetical protein -
  QPK55_RS12285 (QPK55_12285) - 2394704..2394955 (-) 252 WP_000827560.1 response regulator transcription factor -
  QPK55_RS12290 (QPK55_12290) - 2395330..2396208 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  QPK55_RS12295 (QPK55_12295) abrB 2396349..2396627 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QPK55_RS12300 (QPK55_12300) - 2397243..2398493 (+) 1251 WP_001032358.1 hypothetical protein -
  QPK55_RS12305 (QPK55_12305) - 2398561..2399319 (+) 759 WP_000347994.1 TSUP family transporter -
  QPK55_RS12310 (QPK55_12310) - 2399573..2400232 (+) 660 WP_000876937.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=857642 QPK55_RS12295 WP_000842216.1 2396349..2396627(+) (abrB) [Bacillus cereus strain Z4]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=857642 QPK55_RS12295 WP_000842216.1 2396349..2396627(+) (abrB) [Bacillus cereus strain Z4]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489