Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QPK55_RS09945 Genome accession   NZ_CP130284
Coordinates   1941749..1942036 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain Z4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936749..1947036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK55_RS09925 (QPK55_09925) - 1937924..1938088 (+) 165 WP_098033665.1 DUF4083 domain-containing protein -
  QPK55_RS09930 (QPK55_09930) - 1938153..1938614 (+) 462 WP_000024992.1 NUDIX hydrolase -
  QPK55_RS09935 (QPK55_09935) nadE 1938664..1939482 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  QPK55_RS09940 (QPK55_09940) - 1939752..1941632 (+) 1881 WP_001025989.1 FtsX-like permease family protein -
  QPK55_RS09945 (QPK55_09945) abrB 1941749..1942036 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QPK55_RS09950 (QPK55_09950) - 1942312..1943259 (+) 948 WP_000099748.1 serine protease -
  QPK55_RS09955 (QPK55_09955) - 1943301..1943609 (-) 309 WP_001259906.1 ArsR/SmtB family transcription factor -
  QPK55_RS09960 (QPK55_09960) - 1943716..1944651 (+) 936 WP_000877968.1 aldo/keto reductase -
  QPK55_RS09965 (QPK55_09965) - 1944699..1945874 (+) 1176 WP_001082490.1 MFS transporter -
  QPK55_RS29005 - 1945923..1946129 (+) 207 WP_001101741.1 hypothetical protein -
  QPK55_RS09970 (QPK55_09970) - 1946273..1946635 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=857640 QPK55_RS09945 WP_000648324.1 1941749..1942036(+) (abrB) [Bacillus cereus strain Z4]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=857640 QPK55_RS09945 WP_000648324.1 1941749..1942036(+) (abrB) [Bacillus cereus strain Z4]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526