Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V9L10_RS08620 Genome accession   NZ_CP147025
Coordinates   1800002..1800631 (+) Length   209 a.a.
NCBI ID   WP_000839134.1    Uniprot ID   -
Organism   Escherichia coli strain KCTC 2571     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795002..1805631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L10_RS08600 (V9L10_08600) ycbZ 1795403..1797163 (-) 1761 WP_000156518.1 Lon protease family protein -
  V9L10_RS08605 (V9L10_08605) matP 1797349..1797801 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V9L10_RS08610 (V9L10_08610) ompA 1797877..1798917 (-) 1041 WP_000750416.1 porin OmpA -
  V9L10_RS08615 (V9L10_08615) sulA 1799274..1799783 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V9L10_RS08620 (V9L10_08620) sxy/tfoX 1800002..1800631 (+) 630 WP_000839134.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V9L10_RS08625 (V9L10_08625) yccS 1800594..1802756 (-) 2163 WP_000875061.1 YccS family putative transporter -
  V9L10_RS08630 (V9L10_08630) yccF 1802766..1803212 (-) 447 WP_001261235.1 YccF domain-containing protein -
  V9L10_RS08635 (V9L10_08635) helD 1803335..1805389 (+) 2055 WP_012304887.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.98 Da        Isoelectric Point: 9.2180

>NTDB_id=857587 V9L10_RS08620 WP_000839134.1 1800002..1800631(+) (sxy/tfoX) [Escherichia coli strain KCTC 2571]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAIVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=857587 V9L10_RS08620 WP_000839134.1 1800002..1800631(+) (sxy/tfoX) [Escherichia coli strain KCTC 2571]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATTGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995