Detailed information NTG0857585

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: Q2B68_RS19100
• Genome accession: NZ_CP130280
• Coordinates: 3818932..3820077 (+)
• Length: 381 a.a.
• NCBI ID: WP_024085922.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PM415
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3813932..3825077

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q2B68_RS19080 (Q2B68_19080)	-	3814407..3815123 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
Q2B68_RS19085 (Q2B68_19085)	narK	3815221..3816411 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
Q2B68_RS19090 (Q2B68_19090)	argS	3816545..3818215 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
Q2B68_RS19095 (Q2B68_19095)	-	3818212..3818640 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
Q2B68_RS19100 (Q2B68_19100)	rapF	3818932..3820077 (+)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
Q2B68_RS19105 (Q2B68_19105)	-	3820061..3820180 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
Q2B68_RS19110 (Q2B68_19110)	speB	3820303..3820740 (-)	438	Protein_3712	agmatinase	-
Q2B68_RS19115 (Q2B68_19115)	-	3820902..3822329 (-)	1428	WP_046341451.1	DUF885 family protein	-
Q2B68_RS19120 (Q2B68_19120)	-	3822330..3823670 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
Q2B68_RS19125 (Q2B68_19125)	-	3823667..3824722 (-)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45768.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=857585 Q2B68_RS19100 WP_024085922.1 3818932..3820077(+) (rapF) [Bacillus amyloliquefaciens strain PM415]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=857585 Q2B68_RS19100 WP_024085922.1 3818932..3820077(+) (rapF) [Bacillus amyloliquefaciens strain PM415]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533