Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   STYK_RS08080 Genome accession   NZ_AP024523
Coordinates   1593621..1593914 (-) Length   97 a.a.
NCBI ID   WP_033686503.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1588621..1598914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS08070 (STYK_15430) metF 1589879..1590745 (-) 867 WP_045612155.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  STYK_RS08075 (STYK_15440) metE 1590847..1593096 (-) 2250 WP_261804851.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  STYK_RS08080 (STYK_15460) HI0659 1593621..1593914 (-) 294 WP_033686503.1 helix-turn-helix domain-containing protein Machinery gene
  STYK_RS08085 (STYK_15470) - 1594101..1594466 (-) 366 WP_060627704.1 TIGR02328 family protein -
  STYK_RS08090 (STYK_15480) - 1594450..1594854 (-) 405 WP_261804852.1 YbgA family protein -
  STYK_RS08095 (STYK_15490) - 1594958..1596559 (-) 1602 WP_261804853.1 type I restriction-modification system subunit M -
  STYK_RS08100 (STYK_15500) - 1596584..1598461 (-) 1878 WP_261087864.1 AAA family ATPase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10666.32 Da        Isoelectric Point: 5.8787

>NTDB_id=85757 STYK_RS08080 WP_033686503.1 1593621..1593914(-) (HI0659) [Streptococcus toyakuensis strain TP1632]
MKNSAIGSNWKDVRSELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQGKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=85757 STYK_RS08080 WP_033686503.1 1593621..1593914(-) (HI0659) [Streptococcus toyakuensis strain TP1632]
ATGAAGAATAGTGCTATTGGGAGTAACTGGAAGGATGTCCGGTCAGAACTCTTTACCAAGGAGGAAATACTTGAAAGTGA
TATGCGAGTAGCTATCATGAGTGAGTTGATTGAGGCTAGACATGAGCAAGGAATCAGTCAGAAAAAGCTAGAAGAACTCA
GTGGAGTAAGCCAGCCGGTTATAGCTAGGATGGAAACAGGTAAGACTAGCCCTCAGTTGGACACAGTCTTAAAAGTCCTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment