Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   Q2B68_RS13630 Genome accession   NZ_CP130280
Coordinates   2759845..2760612 (-) Length   255 a.a.
NCBI ID   WP_046559881.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2754845..2765612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS13610 (Q2B68_13610) - 2755047..2755859 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  Q2B68_RS13615 (Q2B68_13615) ccpN 2755885..2756523 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  Q2B68_RS13620 (Q2B68_13620) glyS 2756624..2758663 (-) 2040 WP_115996543.1 glycine--tRNA ligase subunit beta -
  Q2B68_RS13625 (Q2B68_13625) glyQ 2758656..2759543 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  Q2B68_RS13630 (Q2B68_13630) recO 2759845..2760612 (-) 768 WP_046559881.1 DNA repair protein RecO Machinery gene
  Q2B68_RS13635 (Q2B68_13635) - 2760649..2760792 (-) 144 WP_007408286.1 YqzL family protein -
  Q2B68_RS13640 (Q2B68_13640) era 2760948..2761853 (-) 906 WP_003152978.1 GTPase Era -
  Q2B68_RS13645 (Q2B68_13645) - 2761834..2762244 (-) 411 WP_003152976.1 cytidine deaminase -
  Q2B68_RS13650 (Q2B68_13650) - 2762368..2762742 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  Q2B68_RS13655 (Q2B68_13655) ybeY 2762723..2763196 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  Q2B68_RS13660 (Q2B68_13660) - 2763197..2765329 (-) 2133 WP_265423059.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29263.92 Da        Isoelectric Point: 8.7950

>NTDB_id=857561 Q2B68_RS13630 WP_046559881.1 2759845..2760612(-) (recO) [Bacillus amyloliquefaciens strain PM415]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQKTKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=857561 Q2B68_RS13630 WP_046559881.1 2759845..2760612(-) (recO) [Bacillus amyloliquefaciens strain PM415]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGTAGCGTCTCGTTAAAACAGAAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89