Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q2B68_RS08355 Genome accession   NZ_CP130280
Coordinates   1583814..1584098 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578814..1589098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS08335 (Q2B68_08335) - 1580061..1580969 (+) 909 WP_058905990.1 ketopantoate reductase family protein -
  Q2B68_RS08340 (Q2B68_08340) - 1580999..1582231 (-) 1233 WP_025851469.1 aminopeptidase -
  Q2B68_RS08345 (Q2B68_08345) - 1582332..1582466 (-) 135 WP_003154559.1 protein YkpC -
  Q2B68_RS08350 (Q2B68_08350) mreBH 1582538..1583545 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  Q2B68_RS08355 (Q2B68_08355) abrB 1583814..1584098 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q2B68_RS08360 (Q2B68_08360) - 1584271..1585575 (+) 1305 WP_014304932.1 ATP-binding protein -
  Q2B68_RS08365 (Q2B68_08365) - 1585577..1586404 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  Q2B68_RS08370 (Q2B68_08370) ktrC 1586445..1587110 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  Q2B68_RS08375 (Q2B68_08375) ade 1587259..1588992 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=857545 Q2B68_RS08355 WP_003154557.1 1583814..1584098(+) (abrB) [Bacillus amyloliquefaciens strain PM415]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=857545 Q2B68_RS08355 WP_003154557.1 1583814..1584098(+) (abrB) [Bacillus amyloliquefaciens strain PM415]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543