Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   Q2B68_RS08245 Genome accession   NZ_CP130280
Coordinates   1563319..1563915 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1558319..1568915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS08215 (Q2B68_08215) - 1558533..1558988 (+) 456 WP_024085239.1 flavodoxin -
  Q2B68_RS08220 (Q2B68_08220) dapD 1559070..1559780 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  Q2B68_RS08225 (Q2B68_08225) - 1559851..1560975 (+) 1125 WP_302565196.1 N-acetyldiaminopimelate deacetylase -
  Q2B68_RS08230 (Q2B68_08230) - 1561036..1561281 (+) 246 WP_003154596.1 YkuS family protein -
  Q2B68_RS08235 (Q2B68_08235) - 1561315..1562121 (-) 807 WP_265423031.1 mechanosensitive ion channel family protein -
  Q2B68_RS08240 (Q2B68_08240) - 1562409..1562867 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  Q2B68_RS08245 (Q2B68_08245) rok 1563319..1563915 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  Q2B68_RS08250 (Q2B68_08250) - 1563936..1564928 (-) 993 WP_043867052.1 hypothetical protein -
  Q2B68_RS08255 (Q2B68_08255) - 1565074..1565676 (+) 603 WP_060386913.1 molybdenum cofactor guanylyltransferase -
  Q2B68_RS08260 (Q2B68_08260) - 1565728..1566747 (+) 1020 WP_069013468.1 molybdopterin-synthase adenylyltransferase MoeB -
  Q2B68_RS08265 (Q2B68_08265) glp 1566765..1568057 (+) 1293 WP_088005373.1 gephyrin-like molybdotransferase Glp -
  Q2B68_RS08270 (Q2B68_08270) mobB 1568018..1568539 (+) 522 WP_003154581.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=857544 Q2B68_RS08245 WP_003154591.1 1563319..1563915(+) (rok) [Bacillus amyloliquefaciens strain PM415]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=857544 Q2B68_RS08245 WP_003154591.1 1563319..1563915(+) (rok) [Bacillus amyloliquefaciens strain PM415]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGTCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843