Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   Q2B68_RS08145 Genome accession   NZ_CP130280
Coordinates   1547459..1547923 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain PM415     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542459..1552923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS08125 (Q2B68_08125) - 1542939..1544759 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  Q2B68_RS08130 (Q2B68_08130) - 1544785..1545954 (-) 1170 WP_044053155.1 aminotransferase A -
  Q2B68_RS08135 (Q2B68_08135) - 1546155..1546316 (-) 162 WP_007409608.1 hypothetical protein -
  Q2B68_RS08140 (Q2B68_08140) cheV 1546505..1547416 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  Q2B68_RS08145 (Q2B68_08145) kre 1547459..1547923 (-) 465 WP_003154622.1 YkyB family protein Regulator
  Q2B68_RS08150 (Q2B68_08150) - 1548046..1549338 (-) 1293 WP_024085236.1 MFS transporter -
  Q2B68_RS08155 (Q2B68_08155) - 1549414..1549908 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  Q2B68_RS08160 (Q2B68_08160) - 1549983..1550846 (-) 864 WP_302565195.1 metallophosphoesterase -
  Q2B68_RS08165 (Q2B68_08165) fadH 1550990..1551754 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  Q2B68_RS08170 (Q2B68_08170) - 1551864..1552409 (+) 546 Protein_1557 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=857543 Q2B68_RS08145 WP_003154622.1 1547459..1547923(-) (kre) [Bacillus amyloliquefaciens strain PM415]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=857543 Q2B68_RS08145 WP_003154622.1 1547459..1547923(-) (kre) [Bacillus amyloliquefaciens strain PM415]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929