Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   STYK_RS04780 Genome accession   NZ_AP024523
Coordinates   923006..924808 (+) Length   600 a.a.
NCBI ID   WP_261047672.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 918006..929808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS04760 (STYK_08830) rnr 918302..920656 (+) 2355 WP_261805330.1 ribonuclease R -
  STYK_RS04765 (STYK_08840) smpB 920619..921086 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  STYK_RS04770 (STYK_08850) tehB 921101..921961 (+) 861 WP_261805331.1 SAM-dependent methyltransferase TehB -
  STYK_RS04775 (STYK_08860) coiA 922034..922987 (+) 954 WP_261805332.1 competence protein CoiA Machinery gene
  STYK_RS04780 (STYK_08870) pepF 923006..924808 (+) 1803 WP_261047672.1 oligoendopeptidase F Regulator
  STYK_RS04785 (STYK_08880) - 924810..925523 (+) 714 WP_261805333.1 O-methyltransferase -
  STYK_RS04790 (STYK_08890) prsA 925590..926528 (+) 939 WP_004254642.1 peptidylprolyl isomerase PrsA -
  STYK_RS04795 (STYK_08900) ftsW 926689..927912 (+) 1224 WP_084887824.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69905.82 Da        Isoelectric Point: 4.5504

>NTDB_id=85746 STYK_RS04780 WP_261047672.1 923006..924808(+) (pepF) [Streptococcus toyakuensis strain TP1632]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEQLEKVSQYEGHLLDSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEEQYADFLEAQPKLQVYQHYFDKLLQGKEHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEEALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQVYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=85746 STYK_RS04780 WP_261047672.1 923006..924808(+) (pepF) [Streptococcus toyakuensis strain TP1632]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAACTGGAGAAAGTAAGCCAGTATGAAGGTCATCTCTTGGATAGCGCGGATAGCC
TACTAGAAATTACTGAATTTTCTCTTGAAATGGAACGCCAGATGGAGAAGCTTTACGTCTATGCTCATATGAAGAATGAT
CAGGATACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCAATGACACTCTACAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAGCCTGAATTTATGGAGATTAGTGAAGAGCAGTATGCTGACTTTTTAGAGGCTCAACCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAGCTTTTACAAGGCAAGGAACACGTTCTATCACAACGTGAAGAAGAATTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTATTCCCTTATGTCCTTGACGA
TGATGGTAAGGAAGTTCAGCTATCTCATGGGACTTACACACGTTTGATGGAGTCTAAAAATCGTGAGGTGCGTCGTGGTG
CCTATCAAGCACTTTATGCGACTTATGAACAATTCCAACATACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTGCAA
AACTACCGTGCCAAAGTTCGCAACTATAAGAGTGCTCGTCATGCAGCCCTAGCAGCGAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTACATCGTTACCTGGAGTTGCGTTCAAAGATTTTGGGGA
TTTCAGACCTCAAGATGTATGATGTTTACACTCCGCTTTCGTCTGTCGAATATAGTTTTACCTACCAAGAAGCCTTGAAA
AAAGCAGAAGAAGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGAGCCTACTCTGGTGGTTCTTACGATACCAATGCTTTTATGCTTCTCAACT
GGCAGGACAATCTAGACAATCTTTTTACTCTTGTTCATGAAACAGGTCACAGTATGCATTCCAGCTATACTCGCGAAACT
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCATCAACTACCAATGAAAATATCTTAACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCGATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAACACGCTATTCACCAAGCGGATCAAAATGGTGAAGTCTTGACAAGCGATTTC
CTAAATAAACTCTATGCAGACTTGAACCAAGTGTATTATGGTCTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCACGTATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACAGGTTTTGCAGCAGCCTCAGCCCTGGCTG
AAAAGATTGTTCATGGTAGTCAAGAAGACCGTGACCGTTATATCGACTACCTCAAGGCAGGTAAATCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
AAATGAGTTTGAAGCACTTGTTGAAAAATTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.45

99.333

0.67

Multiple sequence alignment