Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   V4Q90_RS09065 Genome accession   NZ_CP146990
Coordinates   2025307..2027133 (-) Length   608 a.a.
NCBI ID   WP_010946603.1    Uniprot ID   Q5ZX65
Organism   Legionella pneumophila strain LEG1116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2020307..2032133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q90_RS09030 (V4Q90_09010) - 2020336..2022288 (+) 1953 WP_010946597.1 heme lyase CcmF/NrfE family subunit -
  V4Q90_RS09035 (V4Q90_09015) - 2022285..2022818 (+) 534 WP_350534557.1 DsbE family thiol:disulfide interchange protein -
  V4Q90_RS09040 (V4Q90_09020) - 2022818..2023219 (+) 402 WP_010946599.1 cytochrome c-type biogenesis protein -
  V4Q90_RS09045 (V4Q90_09025) - 2023212..2023898 (+) 687 WP_011213331.1 tetratricopeptide repeat protein -
  V4Q90_RS09050 (V4Q90_09030) - 2023888..2024091 (+) 204 WP_011213332.1 dodecin -
  V4Q90_RS09055 (V4Q90_09035) - 2024147..2024551 (+) 405 WP_010946601.1 DUF4156 domain-containing protein -
  V4Q90_RS09060 (V4Q90_09040) - 2024746..2025297 (-) 552 WP_010946602.1 DNA-3-methyladenine glycosylase -
  V4Q90_RS09065 (V4Q90_09045) recQ 2025307..2027133 (-) 1827 WP_010946603.1 DNA helicase RecQ Machinery gene
  V4Q90_RS09070 (V4Q90_09050) - 2027247..2028401 (+) 1155 WP_010946604.1 acyl-CoA dehydrogenase family protein -
  V4Q90_RS09075 (V4Q90_09055) - 2028418..2029194 (+) 777 WP_011213333.1 enoyl-CoA hydratase-related protein -
  V4Q90_RS09080 (V4Q90_09060) - 2029197..2030255 (+) 1059 WP_010946606.1 enoyl-CoA hydratase/isomerase family protein -
  V4Q90_RS09085 (V4Q90_09065) - 2030421..2031287 (-) 867 WP_010946607.1 Lpg0189 family type II secretion system effector -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 68846.92 Da        Isoelectric Point: 8.1474

>NTDB_id=857435 V4Q90_RS09065 WP_010946603.1 2025307..2027133(-) (recQ) [Legionella pneumophila strain LEG1116]
MGTLAQPSFINPNALAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRPGVGIVVSPLIALME
DQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPERLISTSFLDRLSECTISLFAIDEAHCISQWGHDFR
PEYACLGLLKTNFPDIPMIALTATADKQTREDIVTKLNYQPKKYVVSFNRPNIHYKVVPKTNAVKQLNLFLQSDTQQSGI
IYCGTRHTVEHLTAKLQELGFKARAYHAGLPHAVRREVQNLFRYDRIDIVVATIAFGMGIDKPNVRFVVHHDLPKSIEGY
YQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLEEQRHIETNKLNHMLAFAEASHCRRQILLRYFDEPSHTECKNC
DVCDNPPQTADATEDAQKFLSCIYRLKQSYGLTHTIDVLRGSLSEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKD
YCLQDMNHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKLRALRRQLADEENKPPFMIF
SDATLHEMAQSKPKNSKQLLNVSGVGQHKLARYGHYFLEALNEFSEVE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=857435 V4Q90_RS09065 WP_010946603.1 2025307..2027133(-) (recQ) [Legionella pneumophila strain LEG1116]
ATGGGAACTTTAGCGCAACCATCTTTTATAAATCCAAACGCATTAGCTGTTTTAAAAAAATATTTTGGATTTGATTCCTT
CAGACCTCCTCAGGAAAAAATAATTGAGGATGTCATTTCTGGGGAAGATGTACTGGTTTTGATGCCTACTGGAGGGGGAA
AATCGCTTTGCTATCAAATTCCAGCCATTGTCCGCCCTGGTGTTGGCATTGTAGTATCTCCTTTAATCGCGTTAATGGAA
GATCAAGTAACCGCTCTCAAACTGCAGGGTATTCGTGCGGCTTACTACAACTCATCCTTAACCGCCGAAGAGGCTAGAAA
TGTATTAAATCAATTACATCATAATGAATTGGATTTACTCTATATTGCTCCAGAACGTCTTATTAGTACCTCGTTTCTGG
ATCGGCTGTCAGAATGTACTATCTCTTTATTTGCTATCGATGAAGCACACTGTATTTCACAATGGGGACATGATTTTCGA
CCTGAATACGCCTGTTTAGGTTTACTGAAAACTAACTTTCCTGACATTCCTATGATTGCTCTGACAGCTACTGCCGATAA
GCAAACACGTGAGGATATTGTTACCAAGTTGAATTATCAACCCAAAAAATACGTTGTTTCATTCAATCGACCGAATATCC
ATTACAAAGTAGTTCCTAAAACAAATGCAGTGAAGCAATTAAATCTGTTTTTACAATCTGATACCCAGCAATCTGGAATT
ATTTATTGTGGAACCCGCCATACAGTCGAACATCTTACAGCGAAATTACAAGAACTTGGATTTAAAGCACGCGCTTATCA
TGCAGGCCTGCCTCATGCGGTGCGGCGTGAGGTGCAAAACCTTTTCAGATACGATCGCATTGATATTGTGGTAGCTACTA
TTGCTTTTGGAATGGGTATTGACAAGCCTAATGTTCGCTTTGTTGTTCACCATGATTTACCCAAAAGCATCGAAGGTTAC
TACCAGGAAACAGGTCGTGCAGGACGTGACGGATTACCGGCCAAGGCCCTTCTTCTTTATGATGCTGCGGATAGTGCCCG
TTTGCGGTCCTGGATCATGAACATTCCTCTTGAGGAGCAAAGACATATAGAAACCAATAAATTAAATCATATGCTTGCTT
TTGCTGAAGCGTCGCATTGTCGTCGTCAAATTTTATTACGCTATTTTGATGAACCTTCTCATACAGAATGTAAAAACTGT
GATGTCTGCGATAACCCACCGCAAACAGCCGATGCAACAGAAGATGCGCAAAAATTTTTATCGTGTATTTATCGATTAAA
ACAAAGCTATGGTTTAACTCATACTATTGATGTCCTGAGAGGTAGTTTATCTGAAAAAATCAAGCAGTCTGGGCATGAGC
ATTTAAGTACCTTTGGAATTGGGAAGGAGAAATCTGCCAATTATTGGAAGCATCTTGCCTGGCAATTAATTCATAAAGAT
TATTGTTTACAGGACATGAATCATTTTAATGTGTTACGCTTGACCCCAAAAGCGATTCCCCTCCTAAAAGGTGAAGAGAG
TATTTCATTAACCATTCCTAACAATGACCTGAATAGCAGTAAAAAGAAAGGCAAGCAGAATCCTTCCTTTAAACCTGAAA
GTAACCCATTATTTGAAAAGCTTCGTGCGTTAAGACGTCAGTTAGCCGATGAAGAAAACAAACCACCATTTATGATATTC
AGTGATGCCACATTACATGAAATGGCCCAATCAAAACCCAAAAACAGTAAGCAACTACTGAATGTATCTGGGGTTGGGCA
ACATAAATTAGCTCGTTATGGCCATTATTTTCTCGAAGCCTTAAACGAATTTTCAGAAGTCGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(536-601)

Helicase conserved C-terminal domain (Helicase_C)

(231-330)

RecQ zinc-binding (RecQ_Zn_bind)

(343-403)

RQC domain (RQC)

(406-515)

DEAD/DEAH box helicase (DEAD)

(29-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZX65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.531

98.191

0.388