Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   V4Q90_RS04750 Genome accession   NZ_CP146990
Coordinates   1096424..1097818 (-) Length   464 a.a.
NCBI ID   WP_011213111.1    Uniprot ID   -
Organism   Legionella pneumophila strain LEG1116     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1091424..1102818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q90_RS04715 (V4Q90_04705) - 1091494..1092504 (-) 1011 WP_011213108.1 class I fructose-bisphosphate aldolase -
  V4Q90_RS04720 (V4Q90_04710) - 1092654..1093388 (-) 735 WP_011213109.1 ferredoxin--NADP reductase -
  V4Q90_RS04725 (V4Q90_04715) dotV 1093472..1094014 (+) 543 WP_010946221.1 type IV secretion system protein DotV -
  V4Q90_RS04730 (V4Q90_04720) - 1094158..1094442 (-) 285 WP_011945638.1 DUF3579 domain-containing protein -
  V4Q90_RS04735 (V4Q90_04725) pssA 1094672..1095409 (+) 738 WP_011213110.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  V4Q90_RS04740 (V4Q90_04730) - 1095638..1095907 (-) 270 WP_010946224.1 HPr family phosphocarrier protein -
  V4Q90_RS04745 (V4Q90_04735) hpf 1096098..1096397 (-) 300 WP_350534654.1 ribosome hibernation promoting factor -
  V4Q90_RS04750 (V4Q90_04740) rpoN/rpoN1 1096424..1097818 (-) 1395 WP_011213111.1 RNA polymerase factor sigma-54 Machinery gene
  V4Q90_RS04755 (V4Q90_04745) rpmG 1098026..1098190 (-) 165 WP_003635328.1 50S ribosomal protein L33 -
  V4Q90_RS04760 (V4Q90_04750) rpmB 1098205..1098441 (-) 237 WP_010946227.1 50S ribosomal protein L28 -
  V4Q90_RS04765 (V4Q90_04755) trmB 1098710..1099423 (+) 714 WP_011213112.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V4Q90_RS04770 (V4Q90_04760) - 1099398..1100522 (+) 1125 WP_011213113.1 M42 family metallopeptidase -
  V4Q90_RS04775 (V4Q90_04765) ankC 1100600..1102087 (+) 1488 WP_011213114.1 Dot/Icm T4SS effector AnkC/LegA12 -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52990.26 Da        Isoelectric Point: 5.3275

>NTDB_id=857421 V4Q90_RS04750 WP_011213111.1 1096424..1097818(-) (rpoN/rpoN1) [Legionella pneumophila strain LEG1116]
MKPTLQIGIGQHLTLTPQLQQAIRLLQLSTFDLQQEIQLVVESNPLLEATPVEEKEDAQINTNQNQDEYSDFQWSQLYNN
LNKRNNFEENDYNFDNLHCTTTNLQDHLNWQLDLTPMSDIDRVIATTIIDAINDDGFLTIPVSEIHASLNSDDFPLDIEE
IEAVRHRLQLFDPVGCASVNLAETLVLQLEQLPLEPKLLATAKKVILEDIELLGQHNYRQLMKNHQISEKTIHEILQVIH
KLNPKPGSLIHQDNIEYVIPDLTVKKIDNQWKVFLNQDILPRLSINSQYAALIQRANNSLDNQFLKHNLQEARWFLKSIQ
SRQETLLKVATCIMEYQHGFLEFGEEAMKPLILNDVASALDMHESTVSRVTTQKFINTPRGVFELKYFFSSHVNTDSGGE
CSSTAIRAVIKKLISTENRKKPLSDSKIAQLIGEQGIKVARRTVAKYREAMGIPPSNERKVISS

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=857421 V4Q90_RS04750 WP_011213111.1 1096424..1097818(-) (rpoN/rpoN1) [Legionella pneumophila strain LEG1116]
ATGAAACCGACATTGCAGATTGGTATTGGTCAACATCTCACGTTAACCCCACAACTGCAACAAGCCATAAGACTGCTGCA
ATTATCCACCTTTGATTTACAACAAGAAATTCAACTCGTTGTTGAATCAAATCCTTTGCTTGAAGCCACTCCTGTTGAAG
AAAAAGAAGACGCCCAAATAAATACCAATCAGAACCAAGATGAATATTCAGATTTTCAATGGTCACAACTGTATAATAAC
TTAAACAAGCGCAATAATTTTGAAGAAAATGATTACAATTTTGATAATTTACACTGCACTACCACCAATTTACAAGATCA
TCTTAACTGGCAACTTGACCTGACGCCTATGAGCGATATTGACCGAGTCATTGCTACAACAATTATTGATGCGATAAACG
ATGACGGCTTTTTAACTATACCCGTTTCTGAAATTCACGCCAGCTTAAATAGCGATGATTTTCCTCTGGATATAGAAGAA
ATAGAAGCAGTGAGACACAGGCTTCAATTATTTGACCCCGTAGGATGCGCATCTGTTAATTTAGCAGAAACACTCGTTTT
GCAATTGGAGCAACTTCCACTGGAACCCAAGCTTCTGGCTACTGCCAAGAAAGTCATTCTTGAAGACATTGAGTTGCTAG
GGCAACATAACTACAGACAACTCATGAAAAATCATCAAATAAGTGAAAAAACAATTCATGAAATATTACAAGTCATTCAT
AAATTAAATCCAAAACCAGGAAGTTTGATCCATCAAGATAATATTGAATATGTTATTCCCGACTTAACTGTTAAAAAGAT
AGATAATCAATGGAAAGTTTTTTTGAATCAAGATATTCTTCCCAGGCTGAGTATCAATAGCCAATATGCCGCTTTAATCC
AACGCGCAAACAATAGTCTGGATAATCAATTCTTAAAGCATAATTTACAAGAAGCACGTTGGTTTTTAAAAAGCATTCAA
AGCCGTCAGGAAACACTTCTAAAAGTAGCAACCTGTATCATGGAATACCAACATGGATTTCTGGAATTTGGTGAAGAAGC
GATGAAACCATTAATATTGAATGATGTAGCTTCTGCCTTGGATATGCATGAATCAACGGTATCAAGAGTGACAACTCAAA
AATTTATTAACACTCCTCGAGGTGTTTTTGAGTTAAAGTACTTCTTCTCCAGCCATGTGAATACTGATAGCGGAGGAGAA
TGCTCTTCCACCGCAATCCGAGCGGTAATAAAAAAATTAATTTCAACAGAGAATAGAAAAAAACCTTTGAGTGATAGTAA
AATTGCCCAACTAATAGGTGAGCAAGGCATTAAAGTAGCAAGACGTACTGTTGCCAAATATCGCGAAGCAATGGGGATTC
CCCCATCCAATGAAAGAAAGGTTATTAGTAGTTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(95-289)

Sigma-54, DNA binding domain (Sigma54_DBD)

(303-460)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

38.889

100

0.422