Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q2T42_RS03090 Genome accession   NZ_CP130144
Coordinates   671701..673257 (+) Length   518 a.a.
NCBI ID   WP_316427781.1    Uniprot ID   A0AA97AQT0
Organism   Leptolyngbya boryana CZ1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 666701..678257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T42_RS03070 (Q2T42_03060) psbD 667355..668410 (+) 1056 WP_017287122.1 photosystem II D2 protein (photosystem q(a) protein) -
  Q2T42_RS03075 (Q2T42_03065) psbC 668394..669776 (+) 1383 WP_017288960.1 photosystem II reaction center protein CP43 -
  Q2T42_RS03080 (Q2T42_03070) - 669908..670441 (+) 534 WP_017288961.1 hypothetical protein -
  Q2T42_RS03085 (Q2T42_03075) - 670438..671607 (-) 1170 WP_017288962.1 cysteine desulfurase family protein -
  Q2T42_RS03090 (Q2T42_03080) comA 671701..673257 (+) 1557 WP_316427781.1 phospholipase D-like domain-containing protein Machinery gene
  Q2T42_RS03100 (Q2T42_03090) - 674306..674665 (-) 360 WP_017288964.1 DUF1818 family protein -
  Q2T42_RS03105 (Q2T42_03095) - 674662..675099 (-) 438 WP_316427782.1 hypothetical protein -
  Q2T42_RS03110 (Q2T42_03100) - 675146..675391 (-) 246 WP_017288966.1 DNA-directed RNA polymerase subunit omega -
  Q2T42_RS03115 (Q2T42_03105) - 675536..676228 (+) 693 WP_316427783.1 GDSL-type esterase/lipase family protein -
  Q2T42_RS03120 (Q2T42_03110) rdgB 676225..676800 (+) 576 WP_316427784.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  Q2T42_RS03125 (Q2T42_03115) - 676871..677632 (-) 762 WP_017288969.1 PEP-CTERM sorting domain-containing protein -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 57500.28 Da        Isoelectric Point: 7.0179

>NTDB_id=857338 Q2T42_RS03090 WP_316427781.1 671701..673257(+) (comA) [Leptolyngbya boryana CZ1]
MVRLNHLIQFSLCTLLFAGCRAASSSISVRPLPQDPNIQVFTNQAATSEYTEPYRKITRAGDNLEDVLIDTIAQAKSSID
VAVQEFRLPNVAKALRDRAAAGVTVRVILENQYARPYSSYSAAEVEKLPEREKARYQESRTLIDQDQDGQLSLTEIQDRD
ALVILDVAKIPRIDDRADGSRGSNLMHHKFIVVDGKTTIVTSANFTMSDVHGDFARPSSRGNANNLLKMESVEVAQAFTA
EFELMWSDRKFGVKKPFRPAQQFKLGESVISLQFSPNSRTIPWEQTPNGLIAKTLQQSTQAIDLALFVFSDQDLVNTIEG
KSIRALIEPSFMYRPFSEGLDMLGVALSNNCKWEVNNRPWQNPIKTAGVPQLPPGDMLHHKFGIVDGHTVITGSHNWTLA
ANRGNDETVIVIQNPVVAAHFQREFDRLYANSVLGIPPAIQRKVEAEQKQCPPPSQSRTGLVNLNTATQAELEALPGVGS
GLAKRIIQARPFQSLEDLDHVPGVGKKLIERLSDRVTW

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=857338 Q2T42_RS03090 WP_316427781.1 671701..673257(+) (comA) [Leptolyngbya boryana CZ1]
GTGGTCAGACTGAATCACCTTATCCAGTTTAGTCTCTGTACGCTCCTATTTGCGGGATGCCGAGCAGCTTCATCTTCGAT
CAGTGTGCGCCCACTGCCACAAGATCCCAACATCCAAGTCTTTACGAATCAAGCAGCGACCTCTGAATATACTGAGCCGT
ATCGCAAAATTACAAGGGCAGGCGATAACTTAGAAGACGTTTTAATCGATACGATCGCACAGGCAAAGTCGAGCATTGAT
GTTGCGGTACAAGAGTTTCGATTGCCCAATGTGGCGAAGGCATTGCGCGATCGAGCCGCAGCAGGCGTGACTGTTCGAGT
GATTCTCGAAAATCAGTACGCTCGTCCTTACAGCAGTTATTCTGCCGCAGAAGTTGAGAAATTGCCGGAGCGAGAAAAAG
CGAGATATCAGGAATCCAGAACGCTGATCGATCAAGATCAAGATGGACAGTTAAGCCTGACTGAAATTCAGGATCGAGAT
GCCTTAGTGATTTTGGATGTTGCGAAGATTCCTCGGATCGATGATCGAGCCGATGGCAGCCGAGGCAGTAACTTAATGCA
CCACAAATTCATAGTTGTGGATGGAAAGACTACGATCGTGACTTCGGCAAACTTCACGATGTCAGACGTACACGGAGACT
TTGCTCGTCCTAGCAGCCGCGGCAATGCTAATAATTTGCTGAAGATGGAAAGTGTGGAAGTTGCACAGGCTTTTACAGCA
GAATTTGAACTCATGTGGAGCGATCGCAAATTTGGCGTGAAAAAGCCATTTCGTCCAGCACAGCAGTTCAAACTGGGCGA
GAGCGTGATTTCCTTGCAGTTCTCACCCAATTCCAGAACGATTCCCTGGGAACAAACACCCAATGGTTTGATTGCCAAAA
CGCTTCAGCAATCCACGCAAGCGATCGATTTAGCGTTGTTTGTGTTCTCGGATCAGGATCTAGTTAATACGATCGAAGGA
AAATCAATTCGGGCATTAATCGAACCCAGCTTCATGTATAGACCTTTCAGCGAAGGTTTAGATATGTTAGGCGTGGCGCT
AAGTAATAACTGCAAGTGGGAAGTCAATAATCGTCCTTGGCAAAATCCCATCAAGACAGCTGGAGTGCCGCAACTTCCGC
CCGGTGATATGTTGCATCACAAGTTTGGAATTGTAGACGGACATACCGTGATTACAGGGTCTCATAACTGGACGCTTGCC
GCGAATCGTGGAAATGATGAAACGGTTATCGTGATTCAGAATCCGGTAGTTGCAGCCCATTTTCAACGAGAATTTGATCG
ACTGTATGCAAATTCAGTTCTGGGGATTCCTCCAGCAATTCAGCGCAAGGTTGAGGCTGAACAGAAACAATGTCCTCCAC
CAAGCCAATCTCGCACCGGGTTAGTCAATCTCAATACTGCAACTCAGGCAGAGTTAGAAGCATTGCCGGGAGTTGGCTCA
GGATTAGCGAAACGAATCATTCAAGCCCGTCCATTTCAGTCCTTGGAAGATCTCGATCATGTGCCTGGTGTCGGGAAGAA
GTTGATAGAACGCTTGAGCGATCGTGTGACCTGGTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(292-428)

PLD-like domain (PLDc_2)

(68-246)

Helix-hairpin-helix motif (HHH_3)

(461-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.123

99.035

0.486