Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RdKW20_RS03620 Genome accession   NZ_CP146693
Coordinates   711591..712205 (+) Length   204 a.a.
NCBI ID   WP_005694351.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706591..717205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RdKW20_RS03595 (RdKW20_000676) - 707008..707526 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  RdKW20_RS03600 (RdKW20_000677) aspS 707745..709511 (+) 1767 WP_005694347.1 aspartate--tRNA ligase -
  RdKW20_RS03605 (RdKW20_000678) nudB 709533..710009 (+) 477 WP_005694349.1 dihydroneopterin triphosphate diphosphatase -
  RdKW20_RS03610 (RdKW20_000679) - 710169..710909 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RdKW20_RS03615 (RdKW20_000680) ruvC 710956..711528 (+) 573 WP_005694350.1 crossover junction endodeoxyribonuclease RuvC -
  RdKW20_RS03620 (RdKW20_000681) ruvA 711591..712205 (+) 615 WP_005694351.1 Holliday junction branch migration protein RuvA Machinery gene
  RdKW20_RS03625 (RdKW20_000682) ruvB 712213..713220 (+) 1008 WP_005694352.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RdKW20_RS03630 (RdKW20_000683) - 713272..713559 (-) 288 WP_005694353.1 DUF5339 domain-containing protein -
  RdKW20_RS03635 (RdKW20_000684) xerD 713732..714625 (-) 894 WP_005694355.1 site-specific tyrosine recombinase XerD -
  RdKW20_RS03640 (RdKW20_000685) - 714656..715822 (-) 1167 WP_005694357.1 3-phenylpropionate MFS transporter -
  RdKW20_RS03645 (RdKW20_000686) proC 715822..716637 (-) 816 WP_005694358.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22603.38 Da        Isoelectric Point: 6.5030

>NTDB_id=857136 RdKW20_RS03620 WP_005694351.1 711591..712205(+) (ruvA) [Haemophilus influenzae strain Rd-KW20]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKVAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=857136 RdKW20_RS03620 WP_005694351.1 711591..712205(+) (ruvA) [Haemophilus influenzae strain Rd-KW20]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCGATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTTACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAGCTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGTCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-201)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.408

100

0.368