Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RdKW20_RS01355 Genome accession   NZ_CP146693
Coordinates   274797..276656 (-) Length   619 a.a.
NCBI ID   WP_005693132.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 269797..281656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RdKW20_RS01345 (RdKW20_000265) lptD 270558..272906 (+) 2349 WP_005693136.1 LPS assembly protein LptD -
  RdKW20_RS01350 (RdKW20_000266) proS 272994..274712 (-) 1719 WP_005693134.1 proline--tRNA ligase -
  RdKW20_RS01355 (RdKW20_000267) recQ 274797..276656 (-) 1860 WP_005693132.1 DNA helicase RecQ Machinery gene
  RdKW20_RS01360 (RdKW20_000268) cyaY 276658..276963 (-) 306 WP_005655473.1 iron donor protein CyaY -
  RdKW20_RS01365 (RdKW20_000269) - 277060..277176 (+) 117 WP_012055197.1 lipoprotein -
  RdKW20_RS01370 (RdKW20_000270) lysA 277224..278471 (+) 1248 WP_005693130.1 diaminopimelate decarboxylase -
  RdKW20_RS01375 (RdKW20_000271) - 278677..279303 (+) 627 WP_005652269.1 response regulator -
  RdKW20_RS01380 (RdKW20_000272) - 279365..279805 (-) 441 WP_005693128.1 DUF2489 domain-containing protein -
  RdKW20_RS01385 (RdKW20_000273) yihI 279809..280369 (-) 561 WP_005693127.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70055.52 Da        Isoelectric Point: 8.0144

>NTDB_id=857112 RdKW20_RS01355 WP_005693132.1 274797..276656(-) (recQ) [Haemophilus influenzae strain Rd-KW20]
MLDSPLLSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=857112 RdKW20_RS01355 WP_005693132.1 274797..276656(-) (recQ) [Haemophilus influenzae strain Rd-KW20]
ATGCTGGATTCTCCTTTACTATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTCGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAACATTCGTTATACCTTGGAAGAAAAATACAAACCTATGGAGCAACTGACACGTTTTGTTTTGGCTCAAAAGGGTAAG
AGTGGGATTATTTATTGCAACAGCCGAAACAAGGTTGAACGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGCGATGATTTACCCGCAGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTATGCTTGGTTACAAAAAATTCTCTTAGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAACATAAATTAGAAGCTA
TTGGTGAATTTGCAGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGC
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGACAATGTTTTGGTGCACATTATGTGATTGCGGTGTTGCGTGGCATGCACAATCAGAAAATTATTGAACGCC
AACACCATAAACTTTCAGTGTATGGCATTGGAAAAGATAAAAGTAAAGAGCATTGGCAGTCCGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAAATTGCTCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACTTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGCTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(32-191)

HRDC domain (HRDC)

(539-605)

RQC domain (RQC)

(409-518)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

96.284

0.38