Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V9Z43_RS16335 Genome accession   NZ_CP146687
Coordinates   3270436..3271065 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain MS 198-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3265436..3276065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z43_RS16320 (V9Z43_16320) helD 3265678..3267732 (-) 2055 WP_001305911.1 DNA helicase IV -
  V9Z43_RS16325 (V9Z43_16325) yccF 3267855..3268301 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V9Z43_RS16330 (V9Z43_16330) yccS 3268311..3270473 (+) 2163 WP_000875041.1 YccS family putative transporter -
  V9Z43_RS16335 (V9Z43_16335) sxy/tfoX 3270436..3271065 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V9Z43_RS16340 (V9Z43_16340) sulA 3271284..3271793 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V9Z43_RS16345 (V9Z43_16345) ompA 3272149..3273189 (+) 1041 WP_001309394.1 porin OmpA -
  V9Z43_RS16350 (V9Z43_16350) matP 3273265..3273717 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V9Z43_RS16355 (V9Z43_16355) ycbZ 3273903..3275663 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=857065 V9Z43_RS16335 WP_000839153.1 3270436..3271065(-) (sxy/tfoX) [Escherichia coli strain MS 198-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=857065 V9Z43_RS16335 WP_000839153.1 3270436..3271065(-) (sxy/tfoX) [Escherichia coli strain MS 198-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1