Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QU660_RS04915 Genome accession   NZ_CP130060
Coordinates   1047995..1049359 (-) Length   454 a.a.
NCBI ID   WP_304947195.1    Uniprot ID   -
Organism   Stomatobaculum sp. F0698     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042995..1054359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU660_RS04895 (QU660_04895) htpG 1043450..1045534 (-) 2085 WP_304947192.1 molecular chaperone HtpG -
  QU660_RS04900 (QU660_04900) - 1045628..1045870 (-) 243 WP_304947193.1 HPr family phosphocarrier protein -
  QU660_RS04905 (QU660_04905) - 1045983..1047446 (-) 1464 WP_304947194.1 phage tail tip lysozyme -
  QU660_RS04915 (QU660_04915) radA 1047995..1049359 (-) 1365 WP_304947195.1 DNA repair protein RadA Machinery gene
  QU660_RS04920 (QU660_04920) - 1049356..1051872 (-) 2517 WP_304947196.1 ATP-dependent Clp protease ATP-binding subunit -
  QU660_RS04925 (QU660_04925) - 1051904..1052947 (-) 1044 WP_304947197.1 ATP--guanido phosphotransferase -
  QU660_RS04930 (QU660_04930) - 1052940..1053542 (-) 603 WP_304947198.1 UvrB/UvrC motif-containing protein -
  QU660_RS04935 (QU660_04935) - 1053546..1053932 (-) 387 WP_304947199.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49380.01 Da        Isoelectric Point: 6.8090

>NTDB_id=857013 QU660_RS04915 WP_304947195.1 1047995..1049359(-) (radA) [Stomatobaculum sp. F0698]
MKRSTAYFCAECGFESPKWAGQCPACKAWNTLVEEPTGAKEKSRAKIQAGRPGVPAPVHLSEIDAARELRIDTGFSELNR
VLGGGTVEGSLVLIGGDPGIGKSTILLQVCKNFAELGKRVLYISGEESLRQIKLRAERLNAMQGDLRFLSETNLDLIREL
LLREKPDVAIIDSIQTMYCDDISAAPGSVSQVRESTNALMQLAKGSGIAIFIVGHVTKEGQVAGPRVLEHMVDTVLYFEG
EKSSSYRILRAVKNRFGSTNEIGVFEMTERGLEEVKNPSAYMLEGRPLGASGAVVACSLEGSRPILLEVQALVTESAFGM
PRRTAAGIDYNRVNLLMAVLEKRCRLPLSRYDAYVNIAGGMRMNEPAVDLAAVIAIISSFRDRAVEADTVIFGEVGLSGE
VRAVPLAEYRIREAAKLGFTRCIMPKSNAEKCRAVENIECCGVSSIQEAMHLLF

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=857013 QU660_RS04915 WP_304947195.1 1047995..1049359(-) (radA) [Stomatobaculum sp. F0698]
TTGAAGCGGAGCACAGCTTATTTTTGCGCCGAATGCGGATTTGAATCGCCGAAGTGGGCGGGGCAGTGCCCCGCCTGCAA
GGCGTGGAATACCCTGGTAGAAGAACCGACGGGCGCCAAGGAAAAGTCACGCGCCAAAATACAGGCCGGGCGCCCGGGGG
TTCCGGCCCCGGTACATTTAAGCGAAATCGATGCGGCAAGAGAATTGCGCATCGACACCGGGTTTTCGGAGTTAAACCGT
GTTCTCGGCGGCGGAACGGTCGAGGGCTCTCTTGTTTTGATCGGCGGAGACCCGGGCATCGGAAAGTCAACCATACTTCT
GCAGGTATGCAAGAACTTTGCGGAACTTGGGAAGCGGGTCCTATATATTTCCGGCGAGGAGTCGCTGCGACAGATTAAAC
TTCGTGCGGAGCGCTTAAACGCCATGCAGGGGGATTTGCGCTTCTTGAGCGAAACCAACCTGGATTTGATTCGGGAATTA
CTGCTCCGCGAAAAACCGGACGTTGCGATTATCGATTCGATTCAGACCATGTATTGTGATGACATCAGCGCCGCGCCGGG
TTCCGTGAGTCAGGTGCGTGAATCGACCAACGCCCTCATGCAACTTGCAAAAGGCAGCGGCATTGCCATCTTTATTGTGG
GACATGTGACCAAGGAGGGGCAGGTGGCCGGTCCCCGCGTGCTTGAGCACATGGTGGATACCGTACTCTATTTTGAAGGA
GAGAAGAGTTCTTCCTATCGAATTCTTCGCGCGGTCAAGAATCGCTTTGGATCCACCAACGAAATCGGTGTCTTTGAGAT
GACCGAGAGGGGCCTTGAAGAAGTCAAAAACCCTTCGGCCTATATGTTGGAGGGGAGACCGCTCGGCGCGAGCGGCGCCG
TGGTTGCCTGCTCGCTTGAGGGGAGTCGGCCTATTTTACTTGAGGTTCAGGCCTTGGTGACGGAGAGCGCCTTCGGTATG
CCGCGTCGAACTGCGGCCGGTATCGACTATAATCGCGTGAATCTCCTGATGGCGGTGCTGGAAAAACGGTGTCGCCTGCC
GTTGTCACGCTATGATGCCTATGTGAATATTGCGGGCGGTATGCGAATGAATGAGCCTGCGGTAGACCTTGCTGCGGTGA
TTGCCATTATTTCTTCCTTTCGAGACCGCGCGGTGGAGGCAGACACTGTTATATTCGGGGAGGTGGGACTCTCCGGAGAG
GTACGTGCCGTGCCGCTTGCGGAATACCGAATTCGTGAAGCCGCTAAGCTCGGTTTTACACGCTGTATCATGCCGAAATC
CAATGCAGAGAAGTGCAGGGCGGTGGAAAACATCGAGTGCTGCGGAGTATCGAGTATACAGGAAGCCATGCATTTACTTT
TTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(350-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.556

99.119

0.551
  radA Streptococcus mitis NCTC 12261

53.201

99.78

0.531
  radA Streptococcus pneumoniae Rx1

53.201

99.78

0.531
  radA Streptococcus pneumoniae D39

53.201

99.78

0.531
  radA Streptococcus pneumoniae R6

53.201

99.78

0.531
  radA Streptococcus pneumoniae TIGR4

53.201

99.78

0.531
  radA Streptococcus mitis SK321

53.201

99.78

0.531