Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V9Z39_RS16085 Genome accession   NZ_CP146681
Coordinates   3210583..3211212 (-) Length   209 a.a.
NCBI ID   WP_000839154.1    Uniprot ID   -
Organism   Escherichia coli strain MS 196-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3205583..3216212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z39_RS16070 (V9Z39_16070) helD 3205825..3207879 (-) 2055 WP_001295354.1 DNA helicase IV -
  V9Z39_RS16075 (V9Z39_16075) yccF 3208002..3208448 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V9Z39_RS16080 (V9Z39_16080) yccS 3208458..3210620 (+) 2163 WP_000875061.1 YccS family putative transporter -
  V9Z39_RS16085 (V9Z39_16085) sxy/tfoX 3210583..3211212 (-) 630 WP_000839154.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V9Z39_RS16090 (V9Z39_16090) sulA 3211431..3211940 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V9Z39_RS16095 (V9Z39_16095) ompA 3212297..3213337 (+) 1041 WP_000750416.1 porin OmpA -
  V9Z39_RS16100 (V9Z39_16100) matP 3213413..3213865 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V9Z39_RS16105 (V9Z39_16105) ycbZ 3214051..3215811 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24223.11 Da        Isoelectric Point: 9.1946

>NTDB_id=856980 V9Z39_RS16085 WP_000839154.1 3210583..3211212(-) (sxy/tfoX) [Escherichia coli strain MS 196-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADYLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=856980 V9Z39_RS16085 WP_000839154.1 3210583..3211212(-) (sxy/tfoX) [Escherichia coli strain MS 196-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTATCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995