Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q1W70_RS02295 Genome accession   NZ_CP130043
Coordinates   439986..442241 (-) Length   751 a.a.
NCBI ID   WP_302098607.1    Uniprot ID   -
Organism   Pseudomonas kielensis strain ZE23JCel16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434986..447241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1W70_RS02260 (Q1W70_02260) murB 435360..436379 (-) 1020 WP_166591302.1 UDP-N-acetylmuramate dehydrogenase -
  Q1W70_RS02265 (Q1W70_02265) - 436376..436840 (-) 465 WP_166591301.1 low molecular weight protein-tyrosine-phosphatase -
  Q1W70_RS02270 (Q1W70_02270) kdsB 436840..437604 (-) 765 WP_166591300.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q1W70_RS02275 (Q1W70_02275) - 437601..437786 (-) 186 WP_095167619.1 Trm112 family protein -
  Q1W70_RS02280 (Q1W70_02280) lpxK 437810..438820 (-) 1011 WP_302098606.1 tetraacyldisaccharide 4'-kinase -
  Q1W70_RS02285 (Q1W70_02285) - 438820..439248 (-) 429 WP_166591298.1 biopolymer transporter ExbD -
  Q1W70_RS02290 (Q1W70_02290) exbB 439245..439880 (-) 636 WP_162530197.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q1W70_RS02295 (Q1W70_02295) comA 439986..442241 (-) 2256 WP_302098607.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q1W70_RS02300 (Q1W70_02300) - 442377..442898 (+) 522 WP_095167612.1 DUF2062 domain-containing protein -
  Q1W70_RS02305 (Q1W70_02305) - 442949..443728 (-) 780 WP_166591296.1 ABC transporter permease -
  Q1W70_RS02310 (Q1W70_02310) - 443725..444657 (-) 933 WP_166591295.1 ABC transporter ATP-binding protein -
  Q1W70_RS02315 (Q1W70_02315) - 444791..445414 (-) 624 WP_166591294.1 glutathione S-transferase -
  Q1W70_RS02320 (Q1W70_02320) - 445458..446117 (-) 660 WP_166591293.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 82337.88 Da        Isoelectric Point: 10.5628

>NTDB_id=856971 Q1W70_RS02295 WP_302098607.1 439986..442241(-) (comA) [Pseudomonas kielensis strain ZE23JCel16]
MRTGMLALALGLLTLVFLPALPPVGMLLAMVLLAMVLLALMLLPFRTYPLAFFLLGLVWACISAQWALDDRLAPELDGQT
RWIEGRVVGLPQYSPGVVRFELADARARRTEVPTLLRLAWYDGPRVNSGERWRLAVTLKRPVGLLNPHAFDYEAWLLAQR
IGATATVKDGHRLQSAQWAWRDAVRQRLLAVDAQGREGALAALVLGDSSGLSRADWQVLQDTGTVHLLVISGQHVGLLAG
MVYLLVAGLARYGLWPQRLAWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLAAWWPWLLALNAVL
LLDPLASLRPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIALGLGPVLLILNLPISLTGPLVNLLAVPWISLLV
LPPALLGTLLLPVPYVGEGLLWLAGGLLDGLFSALSWVAGKLPAWVAPAVPLWAWAIAVLGAVLLLLPKGVPLRPLGWPM
LLLLVFAPPRVVPEGRAEVWQLDVGQGLAIVVRTRQHTLLYDTGPGFRGFDLGAQVVLPALRKFGVRHLDLMLISHAHAD
HAGGARSIWRGLPVRQVISGEPQDLPNELRALPCASGKQWEWDGVRFTLWHWSGATDSNQNSCVLQIEANGERLLLTGDI
DARAERVLLDSPLAVSSHWLQAPHHGSRSSSSEAFVRALAPQGVLISRGHGNSFGHPHPQVVERYQRLGVQIYDSAEHGA
VRLLLGEFTAPQAMRRAARFWRSAPSVSPAP

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=856971 Q1W70_RS02295 WP_302098607.1 439986..442241(-) (comA) [Pseudomonas kielensis strain ZE23JCel16]
ATGCGCACAGGGATGTTGGCGCTCGCGCTGGGTCTGTTGACCCTGGTTTTTTTGCCGGCCTTACCACCGGTCGGGATGTT
GCTGGCGATGGTGTTGCTGGCGATGGTGTTGCTGGCGTTGATGCTGTTGCCGTTTCGCACCTATCCGCTGGCGTTTTTTC
TGTTGGGCCTGGTGTGGGCCTGTATCAGTGCGCAGTGGGCACTCGATGACCGTCTGGCGCCGGAGCTCGACGGCCAGACT
CGCTGGATTGAAGGCCGGGTCGTCGGCTTGCCCCAATACTCGCCAGGGGTAGTGCGTTTTGAATTGGCCGATGCCCGGGC
GCGGCGTACCGAGGTGCCGACGTTGCTCCGGCTGGCCTGGTATGACGGGCCACGGGTCAACAGCGGCGAACGCTGGCGGC
TGGCCGTGACGCTCAAGCGGCCAGTGGGCCTGCTCAACCCCCATGCTTTTGATTACGAGGCCTGGCTGTTGGCGCAACGC
ATCGGTGCCACGGCCACCGTCAAGGACGGACACCGTCTGCAGTCTGCGCAATGGGCCTGGCGCGACGCGGTTCGCCAGCG
CTTGCTGGCCGTCGACGCCCAAGGCCGGGAGGGGGCGCTGGCGGCGTTGGTGCTGGGCGACAGCTCTGGGTTGAGCCGTG
CCGACTGGCAGGTCTTGCAGGACACCGGCACCGTGCACTTGCTGGTGATATCCGGACAGCACGTGGGTTTGCTGGCGGGG
ATGGTCTATCTGCTGGTTGCGGGCCTCGCGCGGTATGGCCTGTGGCCGCAGCGCCTGGCGTGGTTGCCCTGGGCCTGTGG
CCTGGCGTTCGCCGCAGCGCTGGGCTATGGGCTGCTGGCCGGATTCGAGGTGCCCGTGCGCAGGGCCTGCGTGATGATCG
GCCTGGTGTTGTTATGGCGCCTGCGCTTTCGCCATCTGGCGGCCTGGTGGCCCTGGCTGCTGGCGCTGAATGCGGTGCTG
CTGCTGGACCCATTGGCCAGTCTGCGCCCGGGGTTCTGGCTGTCGTTTGCCGCGGTGGCGGTGCTGATCTTCACCTTTGG
CGGGCGACTGGGGCCGTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGCTGATTGCGCTTGGCTTAGGTCCGGTGC
TGTTGATCCTCAACCTGCCCATCAGCCTCACCGGTCCCTTGGTCAATCTGCTGGCCGTGCCCTGGATCAGCCTGCTGGTC
CTGCCACCCGCCTTGCTGGGGACGTTGTTGCTGCCGGTGCCCTATGTCGGGGAGGGGCTGTTGTGGCTGGCTGGCGGCTT
GCTCGATGGGTTGTTCAGTGCACTGAGCTGGGTGGCAGGGAAACTGCCGGCCTGGGTGGCGCCAGCAGTGCCTTTGTGGG
CCTGGGCGATCGCTGTGCTGGGCGCGGTATTGCTGTTGCTGCCCAAGGGGGTGCCGTTGCGGCCACTTGGTTGGCCGATG
TTGCTGCTGCTGGTGTTCGCGCCGCCCCGGGTGGTGCCCGAGGGCCGGGCCGAAGTCTGGCAGCTGGATGTCGGCCAGGG
CCTGGCGATTGTGGTGCGTACCCGGCAACACACCTTGCTCTATGACACGGGGCCGGGTTTTCGCGGGTTTGACCTCGGCG
CGCAAGTGGTCCTGCCGGCGTTGCGCAAGTTCGGTGTCCGCCACCTGGACCTGATGTTGATCAGTCACGCCCATGCCGAT
CATGCCGGGGGCGCACGCTCAATCTGGCGTGGCCTGCCGGTCAGGCAAGTCATCAGCGGCGAACCGCAGGATCTGCCGAA
TGAATTGCGTGCGTTGCCCTGTGCCAGTGGCAAGCAGTGGGAGTGGGACGGTGTGCGTTTTACCCTGTGGCATTGGTCTG
GGGCGACTGACAGCAATCAGAATTCCTGCGTGTTGCAGATTGAGGCCAACGGTGAGCGCTTGCTGCTGACCGGCGATATT
GACGCCCGTGCCGAGCGGGTGTTGCTCGATTCGCCGCTGGCGGTCAGCAGCCATTGGCTGCAAGCGCCGCACCACGGTAG
CCGCAGCTCCTCGTCCGAGGCGTTTGTCCGTGCGCTGGCGCCCCAGGGGGTGCTGATTTCCCGGGGGCACGGCAACAGCT
TCGGTCATCCCCATCCCCAGGTGGTCGAGCGCTATCAACGCCTGGGTGTGCAGATCTATGACAGTGCCGAGCACGGCGCG
GTGCGCCTGCTTCTGGGGGAGTTCACGGCGCCGCAGGCGATGCGTCGCGCCGCGCGTTTCTGGCGCAGTGCGCCGTCTGT
CAGCCCTGCGCCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(203-469)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-690)

Domain of unknown function (DUF4131) (DUF4131)

(23-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.465

95.073

0.594