Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q0Y58_RS31860 Genome accession   NZ_CP129997
Coordinates   6181204..6181728 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain PA1045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6176204..6186728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0Y58_RS31840 pilR 6177466..6178803 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  Q0Y58_RS31845 thiO 6178849..6179943 (-) 1095 WP_034009544.1 glycine oxidase ThiO -
  Q0Y58_RS31850 - 6180083..6180583 (+) 501 WP_234569353.1 GspH/FimT family pseudopilin -
  Q0Y58_RS31855 - 6180706..6181194 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  Q0Y58_RS31860 pilV 6181204..6181728 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  Q0Y58_RS31865 - 6181737..6182552 (+) 816 WP_016254061.1 PilW family protein -
  Q0Y58_RS31870 - 6182549..6183154 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  Q0Y58_RS31875 - 6183168..6186644 (+) 3477 WP_023100239.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=856958 Q0Y58_RS31860 WP_003116261.1 6181204..6181728(+) (pilV) [Pseudomonas aeruginosa strain PA1045]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=856958 Q0Y58_RS31860 WP_003116261.1 6181204..6181728(+) (pilV) [Pseudomonas aeruginosa strain PA1045]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598