Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Q0Y58_RS17085 Genome accession   NZ_CP129997
Coordinates   3054285..3054920 (+) Length   211 a.a.
NCBI ID   WP_302120014.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1045     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3049285..3059920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0Y58_RS17070 - 3049991..3051235 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  Q0Y58_RS17075 - 3051323..3051856 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  Q0Y58_RS17080 comA 3051987..3054212 (+) 2226 WP_302120013.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q0Y58_RS17085 exbB 3054285..3054920 (+) 636 WP_302120014.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q0Y58_RS17090 - 3054917..3055357 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  Q0Y58_RS17095 lpxK 3055357..3056355 (+) 999 WP_031685634.1 tetraacyldisaccharide 4'-kinase -
  Q0Y58_RS17100 - 3056393..3056578 (+) 186 WP_003091157.1 Trm112 family protein -
  Q0Y58_RS17105 kdsB 3056578..3057342 (+) 765 WP_009313830.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q0Y58_RS17110 - 3057342..3057806 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  Q0Y58_RS17115 murB 3057803..3058822 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.07 Da        Isoelectric Point: 6.7279

>NTDB_id=856944 Q0Y58_RS17085 WP_302120014.1 3054285..3054920(+) (exbB) [Pseudomonas aeruginosa strain PA1045]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SRHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=856944 Q0Y58_RS17085 WP_302120014.1 3054285..3054920(+) (exbB) [Pseudomonas aeruginosa strain PA1045]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAGGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806