Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QY917_RS15575 Genome accession   NZ_CP129980
Coordinates   3305075..3306652 (+) Length   525 a.a.
NCBI ID   WP_123674836.1    Uniprot ID   -
Organism   Diaphorobacter sp. C33     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3300075..3311652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY917_RS15550 (QY917_15550) argS 3300362..3302065 (+) 1704 WP_047349344.1 arginine--tRNA ligase -
  QY917_RS15555 (QY917_15555) - 3302078..3302704 (+) 627 WP_012655404.1 SPOR domain-containing protein -
  QY917_RS15560 (QY917_15560) - 3302763..3303413 (+) 651 WP_123674835.1 thiol:disulfide interchange protein DsbA/DsbL -
  QY917_RS15565 (QY917_15565) lptA 3303587..3304246 (+) 660 WP_041838776.1 lipopolysaccharide transport periplasmic protein LptA -
  QY917_RS15570 (QY917_15570) lptB 3304270..3305022 (+) 753 WP_012655406.1 LPS export ABC transporter ATP-binding protein -
  QY917_RS15575 (QY917_15575) rpoN/rpoN1 3305075..3306652 (+) 1578 WP_123674836.1 RNA polymerase factor sigma-54 Machinery gene
  QY917_RS15580 (QY917_15580) - 3306656..3307099 (+) 444 WP_123674837.1 thioesterase family protein -
  QY917_RS15585 (QY917_15585) - 3307096..3308427 (+) 1332 WP_123674838.1 class I SAM-dependent RNA methyltransferase -
  QY917_RS15590 (QY917_15590) - 3308417..3308902 (+) 486 WP_123674839.1 putative toxin-antitoxin system toxin component, PIN family -
  QY917_RS15595 (QY917_15595) - 3308890..3310191 (+) 1302 WP_011803815.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QY917_RS15600 (QY917_15600) - 3310674..3311504 (+) 831 WP_123674840.1 YecA family protein -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 57521.60 Da        Isoelectric Point: 4.5525

>NTDB_id=856833 QY917_RS15575 WP_123674836.1 3305075..3306652(+) (rpoN/rpoN1) [Diaphorobacter sp. C33]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLERTLEEAPREEFGLAQADAPVSEQDREVEDAIY
SGAVSAGQESATSQNDAETSTAESTAEPADWEGDGSVDLAPDDSEWGGDAPARNGAGAGSDDEVDATELARSQESLTAFL
HRQALALRLSELDMAALRFLIESLNDDGYLDESLQDLAASLAGTEDPEQLDELVHRFTVALRLLQSLEPAGVGARGLAEC
LTLQLRAMDQDEEGDPDVIQAALAICDQPLDLLAKRDVRRLAQACGTSEERTRAAMALIARLEPRPGRRFADVDRNIIVP
DVIVKKTGRGGQQNFSVQLNPDVMPRLRVHDIYAGALRGGRGEGHQALQARLQEARWFIKNIQQRFDTILRVSRAIVERQ
KNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQFIAAE
NPHKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=856833 QY917_RS15575 WP_123674836.1 3305075..3306652(+) (rpoN/rpoN1) [Diaphorobacter sp. C33]
ATGAAGCCCGGCCTGTCGCTGCGCGTCTCGCAGCACCTGGCGCTCACACCGCAGTTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAGGTCGAGCAAATGCTCGACGAGAACCCCTTCCTGGAGCGCACGCTGGAAGAGG
CCCCGCGCGAGGAGTTCGGCCTGGCCCAGGCCGATGCACCGGTGAGCGAGCAAGACCGAGAAGTTGAAGATGCTATTTAT
TCAGGAGCTGTCAGCGCAGGGCAGGAAAGCGCTACAAGCCAAAATGATGCAGAAACCTCCACAGCCGAATCCACGGCCGA
ACCCGCGGACTGGGAAGGCGACGGCTCGGTAGACCTGGCGCCCGACGACAGCGAGTGGGGCGGCGACGCCCCGGCGCGCA
ACGGTGCCGGCGCGGGGAGCGACGACGAGGTGGACGCCACCGAGCTGGCCCGCAGCCAGGAGTCGCTCACGGCCTTCCTG
CATCGCCAGGCGCTGGCGCTGCGCCTGTCCGAGCTGGACATGGCCGCGCTGCGCTTCCTCATCGAATCGCTGAACGACGA
CGGCTACCTGGACGAGTCGCTGCAGGACCTGGCCGCCAGCCTGGCGGGCACCGAAGACCCCGAGCAACTCGATGAATTGG
TGCACCGCTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAACCCGCGGGCGTGGGCGCGCGCGGCCTGGCCGAATGC
CTCACGCTGCAGCTGCGTGCGATGGACCAGGACGAAGAGGGCGACCCCGACGTGATCCAGGCCGCGCTGGCCATTTGCGA
CCAGCCGCTGGACCTGCTGGCCAAGCGCGACGTGCGCCGCCTGGCGCAGGCCTGCGGCACCAGCGAAGAGCGCACGCGCG
CCGCGATGGCCTTGATCGCGCGGCTGGAGCCACGCCCGGGCAGGCGCTTTGCCGACGTGGACCGCAACATCATCGTGCCC
GACGTGATCGTCAAGAAAACCGGCCGCGGCGGACAGCAGAACTTCAGCGTGCAGCTCAACCCGGACGTGATGCCGCGCCT
GCGCGTGCACGACATCTACGCCGGTGCGTTGCGCGGCGGCCGTGGCGAAGGCCACCAGGCGCTGCAGGCACGGCTGCAGG
AGGCGCGTTGGTTCATCAAGAACATCCAGCAGCGTTTTGACACCATCCTGCGCGTGTCGCGCGCCATCGTGGAGCGGCAG
AAGAACTTCTTCGTGCATGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGACATTGCCGATGAACTGGGCCTGCACGA
GTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCGCAAGGCACCTACGAACTCAAGTATTTCTTCGGCT
CGGGGCTGGGCACCGAAACCGGCGGCAACGCCTCCAGCACGGCCGTGCGCGCGCTCATCAAGCAGTTCATCGCGGCCGAG
AACCCGCACAAGCCGCTGTCGGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATTGAATGTGCGCGCCGCACCGT
GGCCAAATACCGTGAGGCGCTCAAGATCGCCCCGGCCAACCTCCGCAAGGCACTTTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(367-523)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(147-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.93

100

0.533