Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QY917_RS14790 Genome accession   NZ_CP129980
Coordinates   3161563..3162945 (+) Length   460 a.a.
NCBI ID   WP_011803649.1    Uniprot ID   A0AAX1WWC5
Organism   Diaphorobacter sp. C33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3156563..3167945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY917_RS14765 (QY917_14765) alr 3157215..3158312 (+) 1098 WP_123675313.1 alanine racemase -
  QY917_RS14770 (QY917_14770) - 3158321..3159145 (+) 825 WP_123675312.1 hypothetical protein -
  QY917_RS14775 (QY917_14775) - 3159383..3160402 (+) 1020 WP_123675311.1 cytochrome-c peroxidase -
  QY917_RS14780 (QY917_14780) - 3160509..3161123 (-) 615 WP_123675310.1 glutathione S-transferase family protein -
  QY917_RS14785 (QY917_14785) - 3161271..3161453 (-) 183 WP_012655300.1 hypothetical protein -
  QY917_RS14790 (QY917_14790) radA 3161563..3162945 (+) 1383 WP_011803649.1 DNA repair protein RadA Machinery gene
  QY917_RS14795 (QY917_14795) - 3163015..3163455 (+) 441 WP_088887885.1 glycerate kinase -
  QY917_RS14800 (QY917_14800) - 3163502..3164440 (+) 939 WP_123675309.1 branched-chain amino acid transaminase -
  QY917_RS14805 (QY917_14805) - 3164445..3164651 (+) 207 WP_123675308.1 zinc-finger domain-containing protein -
  QY917_RS14810 (QY917_14810) - 3164754..3166061 (+) 1308 WP_123675307.1 O-antigen ligase -
  QY917_RS14815 (QY917_14815) - 3166071..3167228 (+) 1158 WP_123675306.1 glycosyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47828.30 Da        Isoelectric Point: 6.8876

>NTDB_id=856831 QY917_RS14790 WP_011803649.1 3161563..3162945(+) (radA) [Diaphorobacter sp. C33]
MAKEKTIFSCTECGGTSPRWLGKCPSCGAWNTLIESVPDAGPGKNRLSGAGQYAGLAQAQAVMPLAAIEATEVARTASGI
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGLDASQVNVLAEIQLE
KILATVEATQPAVCVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRMAKATGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPKGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIAGLEIHAVERVDEAMTAVRGLD

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=856831 QY917_RS14790 WP_011803649.1 3161563..3162945(+) (radA) [Diaphorobacter sp. C33]
ATGGCCAAAGAAAAAACCATCTTCTCCTGCACCGAATGCGGTGGCACCAGTCCGCGCTGGCTGGGCAAATGCCCCTCCTG
CGGTGCGTGGAACACCCTGATCGAATCCGTGCCCGACGCTGGACCGGGCAAGAACCGCCTGAGCGGGGCCGGCCAGTACG
CGGGCCTGGCCCAGGCGCAGGCGGTGATGCCGCTGGCCGCCATCGAGGCGACCGAGGTGGCGCGCACGGCGAGCGGCATC
GAGGAACTGGACCGCGTGCTGGGTGGTGGCGTGGTCGAGGGCGGGGTGGTGCTCATCGGCGGCGACCCGGGCATCGGCAA
GTCCACGCTGCTCTTGCAGGCGATGGACGCGCTGCAGCGCGCGGGCCTGCCCACGCTGTACGTGACGGGCGAGGAGAGCG
GCGCCCAGGTGGCGTTGCGTTCGCGCCGGCTGGGGCTGGATGCGAGCCAGGTGAACGTGTTGGCCGAGATCCAACTCGAA
AAAATCCTCGCCACCGTGGAGGCCACGCAGCCCGCGGTGTGCGTCATCGACTCCATCCAGACCGTCTATTCCGACCAGCT
CACCAGCGCCCCGGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCCCACCTCACGCGCATGGCCAAGGCCACGGGCATCG
CCGTCATCCTGGTGGGCCACGTGACCAAGGAGGGTGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGCGACACGCACAGCAGCTTCCGTTTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTGAACGAGAT
CGGCGTGTTCGCCATGACCGAGAAGGGCCTCAAGGGTGTGGCGAACCCCAGTGCCATTTTTTTGAGCCAGCACAGCGAGC
CGGTGCCCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTCGACGGC
GGCGGCCCCAGCCCACGGCGCCTGTCGGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
CGCGGGCGTGGCCTGCGCCGACCAGGACGTATTCGTCAATGCCGTTGGGGGCGTGCGCATCAGCGAACCCGCGGCCGACC
TGGCCGTGATGCTGGCCATCACCAGCAGCCTGCGCGGCAAGGCGTTGCCCAAGGGCTTCATCGCGTTTGGCGAGGTGGGC
CTGGCTGGCGAGGTGCGCCCCGCGCCGCGTGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCACGGTGGCCGT
GGTGCCCAAAGCCAATGCACCCAAGAAGCCGATCGCCGGGTTGGAGATCCACGCAGTGGAGCGCGTGGACGAGGCCATGA
CTGCCGTGCGCGGGCTGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-225)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-454)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.13

0.485
  radA Streptococcus mitis NCTC 12261

47.046

99.348

0.467
  radA Streptococcus pneumoniae D39

48.848

94.348

0.461
  radA Streptococcus pneumoniae TIGR4

48.848

94.348

0.461
  radA Streptococcus mitis SK321

48.848

94.348

0.461
  radA Streptococcus pneumoniae R6

48.848

94.348

0.461
  radA Streptococcus pneumoniae Rx1

48.848

94.348

0.461