Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LDO00_RS05475 Genome accession   NZ_AP024521
Coordinates   1141897..1142526 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E189     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1136897..1147526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO00_RS05455 (NIAHE189_10520) ycbZ 1137287..1139047 (-) 1761 WP_000156526.1 Lon protease family protein -
  LDO00_RS05460 (NIAHE189_10530) matP 1139233..1139685 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  LDO00_RS05465 (NIAHE189_10540) ompA 1139760..1140812 (-) 1053 WP_000750419.1 porin OmpA -
  LDO00_RS05470 (NIAHE189_10560) sulA 1141169..1141678 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LDO00_RS05475 (NIAHE189_10570) sxy/tfoX 1141897..1142526 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LDO00_RS05480 (NIAHE189_10580) yccS 1142489..1144651 (-) 2163 WP_000875019.1 YccS family putative transporter -
  LDO00_RS05485 (NIAHE189_10590) yccF 1144661..1145107 (-) 447 WP_001261235.1 YccF domain-containing protein -
  LDO00_RS05490 (NIAHE189_10600) helD 1145230..1147284 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=85683 LDO00_RS05475 WP_000839153.1 1141897..1142526(+) (sxy/tfoX) [Escherichia coli strain E189]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=85683 LDO00_RS05475 WP_000839153.1 1141897..1142526(+) (sxy/tfoX) [Escherichia coli strain E189]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment