Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V9Z38_RS15775 Genome accession   NZ_CP146675
Coordinates   3245392..3246021 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain MS 69-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3240392..3251021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z38_RS15760 (V9Z38_15760) helD 3240634..3242688 (-) 2055 WP_001445749.1 DNA helicase IV -
  V9Z38_RS15765 (V9Z38_15765) yccF 3242811..3243257 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V9Z38_RS15770 (V9Z38_15770) yccS 3243267..3245429 (+) 2163 WP_000875041.1 YccS family putative transporter -
  V9Z38_RS15775 (V9Z38_15775) sxy/tfoX 3245392..3246021 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V9Z38_RS15780 (V9Z38_15780) sulA 3246240..3246749 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V9Z38_RS15785 (V9Z38_15785) ompA 3247106..3248158 (+) 1053 WP_000750418.1 porin OmpA -
  V9Z38_RS15790 (V9Z38_15790) matP 3248233..3248685 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V9Z38_RS15795 (V9Z38_15795) ycbZ 3248871..3250631 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=856807 V9Z38_RS15775 WP_000839153.1 3245392..3246021(-) (sxy/tfoX) [Escherichia coli strain MS 69-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=856807 V9Z38_RS15775 WP_000839153.1 3245392..3246021(-) (sxy/tfoX) [Escherichia coli strain MS 69-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1