Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   Q0G00_RS08920 Genome accession   NZ_CP129978
Coordinates   1793452..1795260 (-) Length   602 a.a.
NCBI ID   WP_301989279.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain DH-B18     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788452..1800260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0G00_RS08900 (Q0G00_08900) - 1789680..1789997 (-) 318 Protein_1712 NTF2-like N-terminal transpeptidase domain-containing protein -
  Q0G00_RS08905 (Q0G00_08905) - 1790328..1791056 (-) 729 WP_029091616.1 amino acid ABC transporter ATP-binding protein -
  Q0G00_RS08910 (Q0G00_08910) - 1791037..1792401 (-) 1365 Protein_1714 amino acid ABC transporter substrate-binding protein/permease -
  Q0G00_RS08915 (Q0G00_08915) - 1792438..1793136 (-) 699 Protein_1715 transporter substrate-binding domain-containing protein -
  Q0G00_RS08920 (Q0G00_08920) pepF 1793452..1795260 (-) 1809 WP_301989279.1 oligoendopeptidase F Regulator
  Q0G00_RS08925 (Q0G00_08925) - 1795336..1795791 (-) 456 WP_141690893.1 hypothetical protein -
  Q0G00_RS08930 (Q0G00_08930) - 1795995..1796447 (-) 453 WP_301989280.1 competence protein CoiA family protein -
  Q0G00_RS08935 (Q0G00_08935) mecA 1796568..1797248 (-) 681 WP_069119615.1 adaptor protein MecA -
  Q0G00_RS08940 (Q0G00_08940) spxA 1797507..1797914 (-) 408 WP_029091611.1 transcriptional regulator SpxA -
  Q0G00_RS08945 (Q0G00_08945) trpS 1798414..1799403 (+) 990 WP_232011805.1 tryptophan--tRNA ligase -
  Q0G00_RS08950 (Q0G00_08950) - 1799466..1799933 (-) 468 WP_029091609.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67882.91 Da        Isoelectric Point: 4.5985

>NTDB_id=856803 Q0G00_RS08920 WP_301989279.1 1793452..1795260(-) (pepF) [Brochothrix thermosphacta strain DH-B18]
MTGKAITRSEVPVKDTWDLTSIFETDDAWETEFKAVQVLAEEATKFQKTLGDSADQLLAALKYSDELVVRLSQVYVYASM
KHDQDTSNTEYQALNSRAESLAAKASAALSFFEPELLDIDEAVLAAFISESDELGVYAHELEQINKKRPHTLSAPEEALL
AKASEVLGSSQNTFGILNNADLRFPTIKDENGEDVEITHGLYGPLLENSDRRVRRDAFQNVYKTYKSLLNTFASTLTGQI
KQDNFNASVRKFSTARESAVFSNNIPESVHKTLLETVGNNVDLLHRYVSLRKQVLGLDELHVYDLYTPLVADVDELSFTY
EEAKQVTINALAPLGEEYVSILKEGFDKRWVDVVENKGKRSGAYSGGSYGTNPFILLNWHDTLDNLYTLVHEFGHSVHSY
LTRKNQPAVYGDYTIFLAEIASTTNENLLTDYLLKKYDDKKIQAYIINHFLDGFKGTVFRQTQFAEFEHLIHVADQEGNA
LTAEYLTDLYYGINKKYYGDALVHDEEIGNEWARIPHFYYNYYVYQYATGFSAASALAQHILDEGAPAVERYMTFLKAGN
SDYPIDVLKAAGVDMTTAKPIEDALKVFEARLTEFEAIIIEK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=856803 Q0G00_RS08920 WP_301989279.1 1793452..1795260(-) (pepF) [Brochothrix thermosphacta strain DH-B18]
ATGACTGGAAAAGCAATTACACGCTCTGAAGTGCCTGTAAAAGACACTTGGGACTTAACAAGTATTTTTGAAACAGATGA
CGCATGGGAAACAGAATTTAAAGCTGTCCAAGTATTAGCAGAAGAAGCAACTAAATTCCAAAAAACATTAGGTGATAGTG
CAGACCAGCTTCTTGCAGCTTTAAAATATAGTGATGAGCTTGTTGTTCGTTTATCACAAGTTTATGTTTATGCAAGTATG
AAACATGATCAAGATACTAGCAATACAGAGTATCAAGCGTTAAATAGTCGTGCAGAATCATTGGCGGCCAAAGCCTCAGC
TGCACTTTCTTTCTTTGAACCGGAATTATTAGATATTGATGAAGCGGTACTTGCCGCCTTTATTTCTGAGTCTGACGAAT
TAGGTGTATATGCGCATGAGTTAGAACAAATCAATAAGAAACGTCCTCATACATTGTCTGCTCCTGAGGAAGCGTTATTA
GCTAAAGCAAGCGAAGTATTAGGTTCATCTCAAAACACTTTTGGTATTCTAAATAATGCAGATTTACGTTTTCCAACAAT
CAAAGATGAAAATGGTGAAGATGTAGAGATTACACACGGTCTATACGGTCCATTATTGGAAAATAGCGATCGTCGTGTGC
GTCGTGACGCTTTCCAAAATGTGTATAAAACGTATAAGTCATTGCTTAATACATTTGCCTCAACGTTGACTGGTCAAATT
AAGCAAGATAACTTCAATGCATCTGTTCGTAAGTTTAGTACTGCCAGAGAGTCGGCTGTTTTCAGCAATAATATTCCTGA
GTCAGTTCATAAAACATTGCTTGAAACGGTAGGGAATAATGTTGATTTATTACATCGTTATGTGAGTTTACGCAAGCAGG
TATTAGGTCTTGACGAATTGCATGTTTACGATCTTTACACACCGCTTGTAGCGGATGTAGATGAGCTTTCATTTACGTAT
GAAGAAGCTAAACAAGTAACAATTAATGCCTTAGCACCTTTGGGTGAAGAATATGTTTCTATCCTTAAAGAAGGTTTTGA
TAAGCGTTGGGTAGATGTGGTTGAAAATAAAGGGAAACGTAGTGGTGCATACTCTGGCGGTTCATACGGTACCAATCCAT
TTATTCTATTAAACTGGCATGATACATTAGATAATTTGTATACATTAGTTCATGAGTTTGGGCACAGTGTACATAGTTAT
CTCACTCGAAAAAATCAACCGGCAGTTTATGGCGATTATACAATCTTTTTAGCAGAGATTGCTTCAACTACCAATGAAAA
TTTATTGACAGATTATCTTCTGAAAAAATATGATGATAAAAAAATCCAAGCCTATATTATTAACCATTTCCTTGATGGTT
TTAAAGGTACTGTTTTCCGTCAAACACAATTTGCAGAATTTGAGCACCTTATTCATGTTGCTGATCAAGAAGGTAACGCT
TTAACAGCTGAATATCTAACTGATCTCTACTATGGTATTAATAAGAAATATTATGGTGATGCACTGGTACACGATGAAGA
AATTGGTAACGAATGGGCGCGTATTCCTCATTTCTACTACAATTATTACGTGTATCAATATGCAACTGGTTTTTCTGCAG
CTTCAGCTTTGGCACAACATATTTTGGACGAAGGAGCTCCAGCAGTAGAACGTTACATGACGTTCTTAAAAGCGGGTAAC
TCGGATTATCCAATCGATGTGTTGAAAGCTGCTGGCGTTGACATGACTACTGCAAAACCAATTGAGGATGCTTTGAAAGT
TTTCGAAGCACGTCTAACTGAATTCGAAGCAATTATTATAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-586)

Oligopeptidase F (Peptidase_M3_N)

(115-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.339

0.507